Pseudomonas brassicacearum PP1_210F, P908_RS08345
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTCGGCACAACGGGTCATCGACCTGATCGAAACCCAGCGAGCCAGCGGAATAGACGCCTCGCGGATTTTCCTGGCGGGTTTCTCCCAGGGCGGCGCGG TGGTCTATCACACGGCATTCGTGAAATGGCAGGGCCCGCTGGGCGGCGTGGTCGCGCTGTCTACTTATGCACCGACTTTCAGCGATGAGTTGCAATTGTC GGCCAGCCAGCAACGTATTCCAGTCCTGGCGCTGCACGGGCAATACGACGAAGTGGTACTCAACCCCATGGGTCGGACCGCAAAAGAGTATTTGAAGCAG CATGGTGTCACCGTGACATGGCAAGAATACCCAATGGGCCACGAAGTGTTACCCGAGGAGATTCGCGACATCGGCACCTGGCTGGCCGAGCGGTTGCGCT AAGAGGCTGATCGCCACGCCGGTCCTTTGACGATCACACTACGCCGCGCCCGTTTCTTGCATTACACTGGCCGGCGTACATTCCTTAACCAATCGATGAG
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| DNA Sequence for Gene |
>P908_RS08345
ATGACCGTGCTCAAAGCACTCAAGAAGATGTTCGGTAAAAGCGAGGCCGAGCAACTCGCGCCTGGCTCCACTGCGCCGACCCACGGCCCGAGCCGTACCG ATGCGCAACAACCGCGCCGGGCGGCACCTGTTGCACAGGCAACAAAAGAACCCGTCGCCCAGCCTGTTACGGCCCCCGAGCCCGAGAAACCACGCAACGA AACCCCCAGGCCACGGCGCGAACGCGCACCGAAACCGCCGGTCGTCGCCTGGAAGCTCGAGGACTTCGTCGTAGAACCCCAGGAAGGCAAGACCCGCTTC CACGATTTCAAGCTCGCCCCGGAACTGATGCATGCCATCCAGGACCTGGGTTTCCCGTATTGCACGCCGATCCAGGCGCAAGTGCTCGGTTACACCCTCG CCGGCAAAGACGCCATCGGTCGCGCTCAGACCGGCACCGGCAAGACCGCCGCATTCCTGATTTCCATCATCACCCAGCTGCTCCAGACCCCACCGCCCAA GGAACGCTACATGGGCGAACCGCGGGCGCTGATCATCGCGCCGACCCGCGAGCTGGTGGTGCAGATCGCCAAGGACGCCGCCGACCTGACCAAGTACACC GGCCTGAACGTCATGACGTTCGTGGGTGGCATGGATTTCGACAAGCAGCTCAAGCACCTCGAAGCCCGTCACTGCGACATCCTGGTCGCCACGCCGGGCC GCCTGCTGGACTTCAACCAGCGCGGCGACGTGCACCTGGACATGGTCGAAGTGATGGTGCTGGACGAAGCCGACCGCATGCTCGACATGGGCTTCATCCC GCAAGTGCGCCAGATCATTCGCCAGACTCCACCGAAAAGCGAACGCCAGACCCTGCTGTTCTCCGCCACCTTCACCGAGGACGTGATGAACCTGGCCAAG CAGTGGACCACCGACCCTGCCATCGTCGAGATCGAAGCCGAGAACGTCGCCAGCGAAAACGTCGAGCAACATATCTACGCAGTCGCCGGGGCCGACAAGT ACAAGCTGCTCTACAACCTGGTCAACGACAACGGTTGGGAGCGGGTGATGGTGTTCGCCAACCGCAAGGACGAAGTGCGCCGCATCGAGGAACGCCTGGT GCGCGATGGCGTCAACGCGGCCCAGCTCTCGGGCGACGTGCCGCAACACAAGCGCATCAAGACCCTCGAAGGTTTCCGTGAAGGCAAGATTCGCGTGCTG GTGGCCACCGACGTGGCCGGTCGTGGTATCCACATCGACGGCATCAGCCACGTGATCAATTTCACCCTGCCGGAAGTGCCGGACGACTACGTGCATCGCA TCGGCCGTACCGGTCGTGCCGGGGCCGCGGGGGTTTCGATCAGCTTCGCCGGTGAGGATGACTCCTACCAGTTGCCGTCGATTGAGGCGTTGCTGGGGAA AAAGATTAATTGCGAAACTCCGCCGACGCATCTGTTGCGACCGGTCGAGCGCAAGCGCCCTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATCGAGACGGACGCAGAGCGTCCATGAGGCATTCCCACGCAGAGCGTGGGAATGATCAGCGCAGCCAAGACAGGCTGCGCTTTTTTTTGCCTGGGGATA TTGCTCGATTAAACTAAAAGTCCATAATGGACAAATTAGTTTACGCAAGCATCCGGAGCCCCCATGTCCAGCACGCCCCATGTGATGACCCAAGCCCAGG CCCGAGAACTGCTCGGGCAAATCGACGTGCCGCACATCCTGCGCAAGCTGTTCCGTGATCTCGCCGCTGGACAAGCGGTGCAGCCACCCCAGCAACTGGT GGTGTTTCCACAGGGCGCCGGGGACTTCATCAACTATCTGGGTGTGCTGGCTGAAGACCAGGTCTACGGGGTCAAGACCTCGCCCTACATCGTGCGCGAG CAAGGTCCGCTGGTGACCGCCTGGACCTTGTTGATGTCGATGCAGACCGGCCAGCCGCTACTACTGTGCGATGCCGCCGAGTTGACCACCGCTCGCACCG
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| Amino Acid Sequence |
>RNA helicase
MTVLKALKKMFGKSEAEQLAPGSTAPTHGPSRTDAQQPRRAAPVAQATKEPVAQPVTAPEPEKPRNETPRPRRERAPKPPVVAWKLEDFVVEPQEGKTRF HDFKLAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYT GLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTEDVMNLAK QWTTDPAIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVL VATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEALLGKKINCETPPTHLLRPVERKRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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