Pseudomonas brassicacearum PP1_210F, P908_RS05335
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGATCGCCCCGCCGCGCACCCTTTATGAAGAGCCGAAAAACACCTTTGTCGCCAACTTCATCGGTGAGAACAACCGCCTTAACGGCCGCCTGCACAGC CAAACCGGCGAGCGCTGCCTGGTGGAGCTGGGGCGTGGTGAGAAGGTCGAGGCACTGGCGGTGAATGTCGGCAAGCCAGGCGAGCCGGTGACTCTGTCGA TCCGCCCGGAACGGGTGAGCCTCAACGGCGCAAGCGAACAATGTGTCAACCGCTTCTCAGGGAGGGTGGCGGAATTCATCTATCTGGGCGACCACGTCCG GGTTCGCCTGGAAGTCTGCGGCAAGAACGACTTCTTTGTGAAACAACCGATTGCCGAGCTCGATCCCGGGCTCGCCGTCGGGGACGTGGTTCCGCTTGGC TGGCAAGTCGAGCATGTGCGTGCGCTCGATCCCCTTCTAGAGGCGAATTGATCGCCCCCTGCTGTACCAACACCAACCCTGCACGTGGAGAGAACAATAA
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| DNA Sequence for Gene |
>P908_RS05335
ATGTTGAGATCCCTGAAGTTCACAGCCCTGACACTGGGCATGATGGGTGCGGCAAGCGCGATGGCGGCGGGCCCGGACCTGACCGTGGTGTCTTTCGGCG GGGCGAACAAGGCGGCTCAGGTCAAAGCCTTCTACGCACCGTGGGAAGCGGCCGGCAATGGCAAGATCGTGGCTGGCGAGTACAACGGTGAAATGGCCAA GGTCAAGGCCATGGTCGATACCAAGAGCGTTTCCTGGGATTTGGTAGAAGTCGAGTCCCCGGAATTGTCCCGTGGTTGTGACGAAGACATGTTCGAACAA CTCGATCCGGCCCTGTTCGGCAAGGCCGAAGACTACGTCAAGGGTGCTATCCAGCCTTGCGGCGTGGGCTTCTTCGTGTGGTCGACCGTGCTGGCCTACA ACGCCGACAAACTCAAGACCGCGCCGACCAGTTGGGCTGACTTCTGGGACACCAAGCAATTCCCAGGCAAGCGCGGCCTGCGCAAAGGCGCCAAGTACAC CCTGGAATTCGCCCTGATGGCCGATGGCGTAGCGCCGAAAGACGTCTACAAAGTGCTGGCTGGCAAAGACGGCCAGGACCGTGCGTTCAAGAAGCTCGAT GAGCTCAAGCCGAACATCCAGTGGTGGGAAGCTGGCGCCCAGCCACCGCAGTACCTGGCTTCCGGTGACGTGGTCATGAGCTCGGCCTACAACGGCCGGA TCGCCGCGGTACAGAAAGAAAGCAACCTGAAAGTGGTGTGGAACGGCGGCATCTATGACTTCGACGCTTGGGCCATCCCACGCGGCCTGGACAAGACCCG CGCCGAAGCGGCGAAGAAATTCATCGCCTTCTCGGTGGCGCCGCAGCAGCAGAAGACCTACTCGGAAAACATCGCCTACGGTCCGGCCAATACCCAGGCT GTACCGTTGCTGGCCAAGGATGTCCTGAAAGACATGCCAACCACCCCGGAAAACATCGCCAACCAGGTGCAGATCGACGTCAGCTTCTGGGCTGACAACG GTGAGCAACTGGAGCAGCGCTTCAACTCCTGGGCTGCGAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGACGGTCTGAAACCGGATGAGATCCATGTGGGAGCGAGCTTGCTCGCGATAGCGGTCTGTCAGGCACATCAATACTTGAATGTGCCGCAGCCATCGC GAGCAAGCTCGCTCCCACAGGTTCTTCCATCGACCCGGGTGTTTCAAAAGAACAGAGGCGGCCCGCCGCCCCTGTAACGATCAAAAAGATTTGCGGAGTT CGCCATGGCCATCGCCGTTCCACTGAACGCGGGCACCAGCCCCACCCTCAAGCAACGGCTCAAGCACGCCGAGCGGATCAACCGCTGGAAGGCCCAGGCC TTGATTGCGCCGCTGGTGCTGTTTCTGTTGCTGGTGTTCCTGGTGCCGATCGTGGCGCTGCTGTTCAAAAGCGTCAGCAACCCGGAAGTGGTGGGCGCCA TGCCGCGTACGGTCACCGCCGTCGCTGCCTGGGACGGACGTGGTTTGCCGGGCGAGCCGGTGTACAAGGCTGCCAGTGAAGACCTGGCCGAAGCCCGCAA
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| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MLRSLKFTALTLGMMGAASAMAAGPDLTVVSFGGANKAAQVKAFYAPWEAAGNGKIVAGEYNGEMAKVKAMVDTKSVSWDLVEVESPELSRGCDEDMFEQ LDPALFGKAEDYVKGAIQPCGVGFFVWSTVLAYNADKLKTAPTSWADFWDTKQFPGKRGLRKGAKYTLEFALMADGVAPKDVYKVLAGKDGQDRAFKKLD ELKPNIQWWEAGAQPPQYLASGDVVMSSAYNGRIAAVQKESNLKVVWNGGIYDFDAWAIPRGLDKTRAEAAKKFIAFSVAPQQQKTYSENIAYGPANTQA VPLLAKDVLKDMPTTPENIANQVQIDVSFWADNGEQLEQRFNSWAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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