Pseudomonas brassicacearum PP1_210F, P908_RS03260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGGGCTGAACAGCCCTTCCCAAAACCGCTGCGACGGCTTTACATTGGTAGTCGCAGCGCGCCGAGGGGTTTGGTTAAAAAATCAGCGCTTCCCTAAACG CTGGTGTTTTTTTAAACTGTCGAGTCCGCTCGCCCAACCGGGCAGCGCGCATATTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGAAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGTGGCAAAGAGCCGTTGGTCCAGTGGG AAAACGACAAGCCTACCGTAGTAGCGCTGCGTGAAATCGCCGAAGGCCTGATGAGCTACGAGTTCATCGCCAACGCTGAAATCGTCGAAGACGAACCGCT GTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCGGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGGTCACAGCAAACGGCAGGAGTCATCATC
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| DNA Sequence for Gene |
>P908_RS03260
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGGCCTACCTCGGCACGGACCAGGTCAATCTGGTCCGCCGAGCCTATTTCTACGCCGAACAAGCCC ACGACGGCCAGCGCCGCCGCAGCGGCGAGGCGTACGTCACGCATCCTCTTGCGGTGGCGAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCGGCGATGCTGCATGACGTGATCGAAGACACCGGCATTGCCAAGGAAGCGCTGCAGGCGCAGTTCGGCGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAGCTGACCCAGATGAACTTCGAGACCAAGGCCGAGGCCCAGGCCGAAAACTTCCAGAAAATGGCCATGGCCATGGCCCGCGACATTCGCGTGATCC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTGCTGTCCGGCGAAAAACGCCGGCGCATCGCCAAGGAAACCCTGGAAATCTACGC CCCCATCGCCAATCGCCTGGGCATGCACGCGATCCGCATCGAGTTCGAAGACCTCGGCTTCAAGGCCATGCACCCGATGCGTTCGGCGCGGATAAACCAG GCCGTCAAGCGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAGTCGCTGAGCCACTGCCTGGCCATCGACGGCATCGAAGGCGAAGTCA GCGGGCGGCAGAAACACCTCTACGGCATCTACAAGAAAATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTACGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGCTACCGCGTGCTGGGCGCTGTACATAATTTGTACAAACCGTTGCCGGGGCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTATCAGTCGCTGCACACCACGCTGTTCGGCATGCACGGCGTACCCATCGAAATCCAGATCCGCACCCGCGAAATGGAAGAAATGGCCAACAACG GCATCGCCGCCCATTGGCTGTACAAATCCAGCGGTGACGAACAACCCAAGAGCACTCACGCCCGCGCCCGGCAATGGGTCAAGGGGGTGCTGGAAATGCA GCAGCGCGCCGGCAACTCCCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGATGAGGTCTACGTCTTCACGCCCAAGGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCCGTGGACTTTGCCTATGCGGTGCACACCGACGTCGGCAACAGTTGCATCGCGTGCCGGATCAACCGCCGCCTGGCGCCGT TGTCCGAACCGCTGCAAAGCGGTTCCACGGTGGAAATCGTCAGCGCCCCCGGCGCACGACCCAACCCGGCGTGGCTCAATTTCGTGGTCACCGGCAAGGC CCGCACCCATATCCGTCACGCCCTCAAACTGCAACGTCGCTCCGAATCCATCAGCCTCGGCGAACGCCTGCTGAACAAGGTGCTGAACGGTTTCGACAGC TCGCTCGACAAGATCCCGGTCGAGCGCGTGCAACTGATGCTCCACGAATACCGTCTCGAATTGATCGAAGACCTGCTCGAAGACATCGGCCTGGGCAATC GCATGGCCTACGTCGTTGCCCGTCGCCTGCTCGGCGAAGGCGAACAGTTGCCAAGCCCCGAAGGCCCGCTGGCGATTCGCGGCACCGAGGGCCTGGTGCT CAGTTATGCCAAGTGTTGTACGCCGATTCCGGGCGACCCGATTGTCGGCCACTTGTCCGCCGGCAAAGGGATGGTCGTGCACCTGGACAACTGCCGCAAC ATCAGCGAAATCCGTCATAACCCGGAAAAATGCATCCAGCTCTCCTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGGGTCGAGCTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAATGCCGCCGACGGCAATATCGAAAAAATCAGCATGGACGAACGCGATGGCCGCATCAGCGT CGTTCAATTGGTGGTTAGCGTGCACGACCGTGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGCGTTATCCGCATCACCCGGATGCGC GCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCATTCGTTATCAGGAGTCATTCATGACCAAGACCGTTATCACCAGCGACAAGGCCCCCGCCGCCATCGGTACTTATTCCCAGGCGATCAAGGCCGGCA ACACCGTGTACATGTCGGGCCAGATTCCACTGGACCCGAAAACCATGGAACTGGTGGAAGGCTTCGAAGCCCAGACCGTGCAGGTGTTCGAAAACCTCAA GGCCGTGGCCGAGGCCGCCGGTGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCATTTCGCCAAGGTCAACGAGGTGATG GGCAAGTACTTCGACCAGCCTTACCCTGCCCGCGCCGCCATCGGCGTGGCCGCCCTGCCCAAGGGCGCTCAGGTTGAGATGGATGCCATCCTGGTCATCG AGTAAATAAGGCCGGCGCAGCCTCCCCCGCTGCGCCGTTTTCGTCTTGAAAGGATTCCACCATGCGCAAAGCGCTTGCTCTCTCGCTGGCAGCCCTGCTT
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSAYLGTDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARINQ AVKRARGNRKEIVNKIEESLSHCLAIDGIEGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKSTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLDKIPVERVQLMLHEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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