Pseudomonas brassicacearum PP1_210F, P908_RS01420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum PP1_210F scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACTGGAACAGCTCAAGGTGGTGAACCTGTTTTTCAACAAACAGGTGCGCTACGTGGAAGACATCGACCTGTGGCGCGAGGTCGACTACTGGGAGACCC CGATCCAGGCCCTGTGGAAGGGCGCCGGCGATTGTGAAGACTACGCCATCGCCAAGTATTTCAGCCTGCGCCATCTCGGGGTGTCCAGTGACAAGCTGCG CATCACCTACGTCAAGGCCTTGCGGCAGAACCGTGCGCACATGGTGCTCACCTATTACGCCACGCCCGAGGCGATGCCGCTGGTACTCGACAGCCTGATC GACGGCATCCTGCCGGCCAGCCAGCGAACCGACTTGCTCCCGGTCTACTCTTTCAATGCCGAAGGGCTGTGGCTGCCGGGCGCCAAGGGCAACAAGAAAG TGGGTGACACCAAGCGCCTGTCCCGGTGGCAGGATGTGTTGAAGAAAATGCAGGCCGAAGGTTTTCCGGTCGAGACGACTAACTAGGAGCGCGCGCTCAG
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| DNA Sequence for Gene |
>P908_RS01420
ATGTCCTTGTTCAAACAGCTGTTGATCGCTATCTGTCTGTTCCTGGTGGTTGCCTTCAGCGGCAGCTTCATGGTCAGCCTGGAGAGTTCGCGGGCCCAGT ACGTCAATCAGTTGCGCTCCCACGCCCAGGACGCGGCCACGGCGCTGGCGTTGTCGCTGACGCCGAACATCGACGACCCGGCGATGGTGGAGCTGATGGT CAGCTCGATCTTCGACAGCGGCTACTACGCCAGCATCCGCGTGGTCGACGTGGCCACCGACAAGACCCTCGTCGAGCGCACCGGCACGCCGGACGCCGGC AGCGTGCCGCAATGGTTCGTCAAGCTGATCGGCCTGGAACCGGCCGGAGGCGATGCCATCGTCAGCCGCGGCTGGGAACAGGCGGCCCGGGTTGAAGTGG TCAGCCACCCGATGTTCGCCCTCGCCAAGCTGTGGCAGAGCGCGTTGGGCAGCCTGGGTTGGCTTTTTCTGTGCGGTGCCGTGAGCGCGGTGCTGGGGGC CTTGCTGCTGCGTCGTCAGCTCAAGCCGCTGGACTACATGGTGCACCAGTCCCATGCCATCGCCCGTCGCGAGTTCCTGAGCCTGCCAGAGCTGCCGCGC ACGCCTGAACTGCGCCGCGTGGTGCAGGCGATGAACCAGATGGTCGAGAAGCTCAAGGCGCTGTTCCAGGAGCAGGCCGAGCGCAGCGAGAAACTGCGGG TCGAATCCTACCAGGACAACCTCACGGGCCTGGCCAACCGGCGCTACTTCGAAATGCAGCTCAATGCCCGGGTGAGCAACCCGGAGCAGGCCAGCTCCGG TTATCTGCTGTTGCTGCGGGTCAAGGACTTGGCCGGTTTGAACCAGCGGCTGGGCGGGCAGCGCACCGACCAGTTGCTCCAGGCCGTGGGTGAGCAATTG CTGCGTGAGTGCGCGCGGTATCCGGAAACCCACAATCTGGTCACACGTATTCGCGGTGGGGAGTTTGCGGTGCTGGCACCTGGGCTGGTGCGCGAGGAAG CGCTGCAACTGGCGCAGAACCTTGAGGCTGCGTTGGCGAGCCTACATGCGACCGGCGCGACGGATGTGGCGTCGGTGGCCTCCATCGGGCTGGCGCCGTT CGTCCATGGCGACTCGCCGCAAGCGGTGCTCCAGCTCGGCGACCAGGCCCTGGCCCAGGCCGAAAGCCAGGGCGAACCGGGTTGGGCCTGCCTGGATCAC AGCGCGGTGGCCAGTGTCGGTGACGATCACCATGCCTGGCACACGTTGCTCGACCAGGCGTTGAATCATCAGCGTTTCGAACTGTACTTCCAGCCGGTGG TGGCCGCCCAGGACACCCAGGTGGTGCTGCATTACAAAGTGCTGTCGCGGCTGCTCGACGAGCATGGCCAGACCATCCCCGCCGGGCGGTTCCTGCCCTG GTTGGAGCGCTTCGGCTGGACTGCGCGCCTGGACCGTTTGATGCTTGAACAGGTGCTCAGGCAAATGGCCGGGCATGAACAGTCTCTGGCGTTGAACCTG TCTTCGGCGACCTTGGCCGATCCGCAGGCGCTGAACAAGATCTTTGAGATCCTGCGGGCGCATTCCAACCTTGGGTCGCGCCTGACCCTGGAGATTGGTG AAGAGCAATTGCCGGAGCAAGCGGTGCTGGAGCAGTTGACCCGGCGTCTGCGTGAGTTGGGCTTCTCCTTGAGCCTGCAGCGTTTTGGTGGGCGGTTCAG CATGATCGGTAACTTGTCGCGTTTGGGGTTGGCTTACTTGAAGATCGATGGCAGTTATATCCGCGCGATTGATCAGGAAAGTGACAAGCGACTGTTCATC GAGGCGATCCAGCGGGCTGCTCACAGTATTGACCTGCCGTTGATTGCTGAGCGGGTTGAGACGGAGGGGGAGTTGGCGGTGATTCGTGAGATGGGGTTGT TTGGGGTTCAGGGGCAATTGGTGGGTGAGCCTAAGCGTTGGGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCGGTCTTTTATCCTTCTGACTGAGTACATATCCGTTTCTGCGGTAACGGCTGCTTAGGGTTCCGCCCTTACGGCGGCTCACTTTTTTTCAAACGCCAA AAAAAGTAAGCAAAAAAGGCTTGCCCCACCACTCGGTGCCTCGCTTAGGCTCGGCATGCCCTCACTCCGGCATTGCTCCGTGGGCCCGCCGCGAGGCGGC CTGGTAGCCGACCTGGCTCTCCCGGTCGTACACCCGTCAGATCTGTTTGAGCAGGACCTGTGGGAGCAAAGCTTGCTCGCGAGGCGGCCTGACAGCCGAC CTGGCTCTCCCGGTCGTACACCCGTCAGATCTGTTTGAGCAGGACTTGTGGGAGCAAAGCTTGCTCGCGAAGCGACGGCACATTCAGCATTGATGCAAGC AGACCCACCGCCATCGCGAGCAAGCTTTGCTCCCACAGGGATCGGCGGTGGACACTGATCTTATAAACGACCAAAAACCTATGTGCGAGCTTGCTCGCGA
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| Amino Acid Sequence |
>DeoR family transcriptional regulator
MSLFKQLLIAICLFLVVAFSGSFMVSLESSRAQYVNQLRSHAQDAATALALSLTPNIDDPAMVELMVSSIFDSGYYASIRVVDVATDKTLVERTGTPDAG SVPQWFVKLIGLEPAGGDAIVSRGWEQAARVEVVSHPMFALAKLWQSALGSLGWLFLCGAVSAVLGALLLRRQLKPLDYMVHQSHAIARREFLSLPELPR TPELRRVVQAMNQMVEKLKALFQEQAERSEKLRVESYQDNLTGLANRRYFEMQLNARVSNPEQASSGYLLLLRVKDLAGLNQRLGGQRTDQLLQAVGEQL LRECARYPETHNLVTRIRGGEFAVLAPGLVREEALQLAQNLEAALASLHATGATDVASVASIGLAPFVHGDSPQAVLQLGDQALAQAESQGEPGWACLDH SAVASVGDDHHAWHTLLDQALNHQRFELYFQPVVAAQDTQVVLHYKVLSRLLDEHGQTIPAGRFLPWLERFGWTARLDRLMLEQVLRQMAGHEQSLALNL SSATLADPQALNKIFEILRAHSNLGSRLTLEIGEEQLPEQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLSRLGLAYLKIDGSYIRAIDQESDKRLFI EAIQRAAHSIDLPLIAERVETEGELAVIREMGLFGVQGQLVGEPKRWG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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