Pseudomonas brassicacearum DF41, CD58_RS28030

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas brassicacearum strain DF41, complete genome. [Details]
DNA Sequence Upstream of Gene
CGCGACCTGCCGCTGTTCATGAGCGTGGGCAACGGCAAGACCGACTTCACCCTGGCCGACAGTGCCCCGGTTGGCGCGGTGCGCTGCGTGGCCGGGCCGA GTCGGCCACGGGCCAGCCATGCCCACGACGCCAAGGCCTGGCGCCTGATCAGCCAGCTCTCGCTGAATTACTTGTCCCTCAGCGAGCAAGGCCAGGGCGC CGCCGCCCTGCGTGAACTGCTGCGCCTGTATGGCGACAGCAACGACGCGGCGCTGCAATTGCAGATCGAAGGCCTGCGGGAAGTCAGCAGCAAAGCCTGC ACCCGGCGCTTGCCGATGCCCGGCCCGATCGTGTTTGGCCGGGGCCTGGAAATCACCCTGGAATTCGATGAAAACGCGTTTCGCGGCACCGGCGTGTTCC TGCTCGGTGCGGTGTTCGAGCGCTTCCTGGCACGCTACGTGTCAATCAACAGTTTTACCGAGACGGTGATCCGTACCACCGAACGCGGCGAGATCATGCG
DNA Sequence for Gene
>CD58_RS28030
ATGGAAAGCCAAGCCCGGACGTCGTCCGACCCTGTGAGTACCCTGGACGCGATGCACCAGGAGCCCTGGGAATACGACTTCTTCCAGGCGCTGCGGCGCA TCGAGTGCGAATCCCCCGGGCTGCCGCGCCTGGGCCATTCCCTGCGCCTGGCCGATGACCCGCTGCGCCTCGGACAACAGGCCGATTGCACCTTCGCTCC GGCGACCCTGGCCTCGGTGCAACCGGGCATCGACGGTGCACCGGCACGCCTGGAGCAGTTCTTCTTCGGCCTCGGCGGCCCCAACGGCCCGATGCCGCTG CACATCACCGAATACGTACGTGAACGCCAGCGCAACAACGGCGACAGCACCAGCAAACGCTTTCTCGATGTGTTTCACCACCGCTTGCTCAGCCTGTTTT ATCGGGCCTGGGCCGAAGCGCGGCCGACGATCAGCCATGACCGCCCGGACGATGACTACTGGTCGGCGCGCCTGGCCGCCCTCAGCGGCCGGGGCATGCC GAGCCTGCTCAAACAGGGGCTGATCCCCGACACGGCGAAACTGCACTACAGCGGCCACCTGGCAGCACAAACCCGCTACCCGGACGGTTTGAAGGCGATT CTCGGCGAGTACTTCGGCCTGCCGGTGGAGATCGAAGAATACGTCGGCCAATGGCTGGAACTGCCGGAACGCAGCCGCGTCGGTGTCAACGCCCGGCTGG GCGTGGACTTCTGCCTGGGCCGCTATGTGTGGGATCGCCAGCACAAATTCCGCATTCGCCTGGGGCCGCTCAAGCTCGTCGACTACATGGGCATGTTGCC CGGCAGCCAACCGTTCAATGAGCTGGTGGCCTGGGTCGCCGAATACCTGGGTCATGAACTGGACTGGGACCTGAACCTGGTCCTGGAGCAGCCCGAAGTC CCGGCGCTACAACTCAACGGTCGTTTCCGCCTGGGGTTCAATACCTGGCTGGGGCGCCCAGAAACCGATGCCAACGATCTAATACTGGCCCGGCATTACG CCGAACAGGCCAACACCTCACAGACCTCAAGGAGCCATGAGCATGGGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AATCAGTCGCGCCGCGTTGTTCGGCAAACTCAACAGCGTGGCCTACAAAGCCATCGAAGCCGCCACCGTGTTCTGCAAGCTGCGGGGTAACCCCTATGTG GAACTGGCCCACTGGTTTCATCAGTTGCTGCAACTGCAGGACTCGGACCTGCACCGCATCATCCGCCAGTTCAACATTGAGCCGGCGCGCCTGGCCCGCG ACCTGACTGAAGCCCTGGACCGCCTGCCACGGGGTTCGACGTCGATCACTGACCTGTCTTCCCACGTCGAAGAAGCGGTGGAACGCGGCTGGGTCTACGG CAGCCTGATGTTCGGCGAAAGCCAGGTGCGCACCGGTTACCTGGTACTGGGCATTCTCAAGACCCCGAGCCTGCGCCACGCCTTGCTGGGCCTGTCGTCG GAGTTCGACAAGGTCAAGGTCGAAGCCCTGAGCGAGCGCTTTGACGAATACGTCGGCGATTCGCCGGAAAACGCCCTGACCGCCAGCGACGGTTTCAATG
Amino Acid Sequence
>type VI secretion protein
MESQARTSSDPVSTLDAMHQEPWEYDFFQALRRIECESPGLPRLGHSLRLADDPLRLGQQADCTFAPATLASVQPGIDGAPARLEQFFFGLGGPNGPMPL HITEYVRERQRNNGDSTSKRFLDVFHHRLLSLFYRAWAEARPTISHDRPDDDYWSARLAALSGRGMPSLLKQGLIPDTAKLHYSGHLAAQTRYPDGLKAI LGEYFGLPVEIEEYVGQWLELPERSRVGVNARLGVDFCLGRYVWDRQHKFRIRLGPLKLVDYMGMLPGSQPFNELVAWVAEYLGHELDWDLNLVLEQPEV PALQLNGRFRLGFNTWLGRPETDANDLILARHYAEQANTSQTSRSHEHG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site