Pseudomonas brassicacearum DF41, CD58_RS27700
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum strain DF41, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACCGGCGCGCAGCAGACCGCCGACCCGCTCCTTCATTTCCCGGGCGGCTTTGTTGGTAAAGGTCATGGCGACGATGTACTGGGCGCGGATGCCACAGTTC TGGATCAGGTGCGCGATCTTGCGGGTGATCACGCTGGTCTTGCCGGAGCCTGCACCGGCGAGCACCAAAAGAGGGCCGCCGACATAGTTCACGGCTTCTT GCTGCCGGGGATTGAGTCGGGACATGACAGGATCAGGGAGTCGTTTGCGAAATGGGCCGGCATTTTAACAGGCTCTGAGAATTGTGCTGCCCTGTCCGAC TTGTGACGCAACACATCATTGTCATTTGCCGCTTTTGCTACTTTCACGCAGGATGTCGGGCGGACTGGCGTCTAACGTCGACTTCGCGTGGGGAAAAAAC CACCGAAAGCAGGTGTTTGAGAACCGTTTCCATTGGTCATTGCTGATCGGCAGGTCATAATGCCCAGCGCCTACCACCTTGCAGAGTCTAGGGAGTCAGC
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| DNA Sequence for Gene |
>CD58_RS27700
TTGTCTACGCCTGTCGAACCCTTGCGTTTGCTGTTACTGGCCGAAACGCCTGAGTGGTCAGTGATATTACGCGAGTGCCTGGTGCCCATGGGACCGTCGG TCGTGCTGATCAGCGCCCCAAACTGGGACTCGGTCAGCAGCCTGTTCGAAGACAACCGTAACGCGGTATTGCTGACCATAGCGGCGTTGCAACCGACGCC GGGCCGTTGCCGCTTGCCGACGGTTCTGCTGCTTGAGCATGAACCCGCGACTGCACCCGATGGCGTCAGTGACTGGCTGGTGCGCGATGTACTCGATAGG GCGACCCTGCGCCGTTGCCTGCGCCATGTGCGTGAGCGCGGCGTGCTGGAAAACACTCTGCAGCGCCTCGCCGAACAGGACCCGCTGACCGGCATCGCCA ATCGCCAGGGGTTCCAGACTTTGCTGACGGCGCGCCTGGCTGAAAACGAAGGTCGCGGCCTGGCGCTTGGTCACCTCGACCTGGACAACTTCCGCCACGC CAACGATGCCCTGGGTCACCAGGCCGGTGACCGCTTGATTTTGCAAGTGGTGTCGCGGCTCAAGGGGGCACTCGAGGCCGGCGACCAACTGGCGCGGCTG GGCAGCGACGAATTTGCCTTGCTGATCGACACCCGCCGTGCGCCGGAGCGGGCCGAGTGGATGGCCGAGCGCATCACCGAAGCCATGGCTGAACCCTACT GGGTGGACGGCGAAAGCCTGCTGATCGGTTGCAGCCTGGGCATCGCTCACGCCCGCGCCCAGGCCGGCGCGGATCCGCTGATGTGGCACGCCCACATCGC CATGCAGCAGGCCAAGAGCACTCAAGGCTGCACTTTTCATATCTTCAATGAGCGCATCAACCGCAACGCCCGCAGCCTCGCCGACCTGGAAAGCGAACTG CGCCGGGCGCTGCGTCGCGACGAGTTGGAGCTGCATTATCAACCCCGGCTGAACCTTGAGGACGGCAACATCGTTGGCCTCGAAGCCCTGGTGCGCTGGC GTCACGGCGAGCGCGGGCTGCTGCCGCCGAGTGAATTCGTGCCGCTGGCCGAACAGAGTGGCCTGATCGTGCCGCTGGGCTACTGGGTAATTTCCCGAGC ACTGCGCGACATGCAGGCCCTGCGCGAACGCGGGCTGGCGCCCTTGCACATGGCGGTCAACCTGTCTTTCCGGCAGTTCCAGGACAGCCAGTTGCTGCCG ACCCTGAGCCGGCTGATTACCGAGCGGGGCGTCGAGGCCCAGTGGCTGGAGTTCGAACTCACCGAAACCGCGGTCATGCGCCGCAGTGAACTGGTCAAGC AGACCATGGATGCCTTGGGCCGCCTGGGGGTGCGTTTCTCCCTGGACGACTTCGGCACCGGCTTCTCCTCGTTCGTGCACCTCAACAGCCTGCCCATCGC CCTGCTCAAGATCGACAAGAGCTTCGTCGGCGGCATGGAGCAGCGCGAAGAAAACCGCAAACTGGTGCATGCGATGATCAACCTCGCGCACAACCTCAAT CTGGAGGTGGTGGCCGAAGGTGTGGAGACCCGGGAGCAGTTGGACCTGCTGCGTGGCTTTGGTTGCGATCAGGTGCAGGGCTTCTTGATCAGCAAACCGT TGCCGCTGCCTGAATTGGTTGAATACCTGACGTTTGATGGCAACCAATCGACGCAGGAAGTCGTGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACAAACCTTGTGGGAGCGAGCTTGCTCGCGATGACGGCGTGTCAGCCAACCTATCTGTAACGGATACACCGCTATCGCGAGCAAGCTCGCTCCCACAGG GGCCTCACTTGGCTTGGATGCTCTCGAAACGCCGCAACCCGGGCTCACTGCGAATCATCCGTTTCATCTTCCACTCAAACGCCGCCGTCAGGCTCACCGC CGCGCAGGCCAGCCCCAGGGCCAGGCCCCACCAGACGCCGGTCGGCCCCAGTTTAAGTGGAAGGCCATCCACCATGCTGCCGGTGCGCCGATCAGCCAAT AGCAGCCCAGGCCGACCAGGAAGGTGGTCTTGGCATCCTTGAGCCCGCGAATGCAGCCCATCGCGATGGTTTGCGCGCCGTCGAAGAGTTCGAACCACGC GGCCACGGCCAGCAGGCTCACGGCCAAGTCGATTACCGGGCGGAAGGCCGGGTCGTTGTGGTCCAGGAACAAGCCGATCAGTTGGTTCGGCAATAGCCAG
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| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLAETPEWSVILRECLVPMGPSVVLISAPNWDSVSSLFEDNRNAVLLTIAALQPTPGRCRLPTVLLLEHEPATAPDGVSDWLVRDVLDR ATLRRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLTARLAENEGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVSRLKGALEAGDQLARL GSDEFALLIDTRRAPERAEWMAERITEAMAEPYWVDGESLLIGCSLGIAHARAQAGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSLADLESEL RRALRRDELELHYQPRLNLEDGNIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALRERGLAPLHMAVNLSFRQFQDSQLLP TLSRLITERGVEAQWLEFELTETAVMRRSELVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKIDKSFVGGMEQREENRKLVHAMINLAHNLN LEVVAEGVETREQLDLLRGFGCDQVQGFLISKPLPLPELVEYLTFDGNQSTQEVVV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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