Strain | Pseudomonas brassicacearum strain DF41, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
AAAGACGACGCGGCCAACTTCCCTGACCCGGCCGACCGTGCCAGCCAGGAAGAAGAATTCAGCCTGGAACTGCGCGCCCGTGACCGTGAGCGCAAGCTCA TCAAGAAAATCGACAAGACCTTGCAACTGATCGAAGACGAAGAATACGGTTGGTGCGAGTCCTGCGGCGTCGAGATCGGCATCAAGCGACTGGAAGCACG TCCAACCGCCGACATGTGTGTCGACTGCAAGACCCTGGCGGAAATCAAGGAAAAACAGGTCGGCAAGTAATTGCCCGGGCTGTCACAAAAAAACGGAGCG TTCACACGCTCCGTTTTTTTGTTTCTGAAACTTCCTCCAAGCGTGACAAAACCCTGTGGGAGCGAGCTTGCTCGCGATAGCGCCGGATCAGCCAGCATCC ATGTGACTGACACCCCGCCATCGCGAGCAAGCTCGCTCCCACAGAGTGATCGCAGATAGATACATGTTCCCGCCAAACCGGACCTAGTAACATTCTTCCC
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DNA Sequence for Gene |
>CD58_RS24225
ATGACGCCCACCTCCCCCTACATCGGCCGCTTCGCCCCCACCCCCAGCGGCCACCTGCACTTCGGCTCGCTGGTCGCCGCGCTGGCGTCATACCTGGATG CCCGGGCCGTGGGCGGGCGCTGGTTGCTGCGCATGGAAGACCTCGACCCGCCACGGGAAGAACCCGGCGCGCAAGCCGCGATCCTCCGGGCACTGGAAAG CTATGGGTTTGAATGGGACGGCGAAATGGTCCGCCAGAGCGAGCGCCATGAAGCCTACGACCAGGTCATCAACCGGCTGCTCAGCCAGGGGTTGGCCTAC GCGTGCACCTGCTCGCGTAAACAACTGGAGGCGTACCAGGGCATTTACCCTGGATTGTGTCGCAACGCCGGGCATGGCACTGAGAACGCCGCCATTCGCC TGCGCGTTCCTGAGTTGGTGTACCACTTCACCGACCGGGTCCAGGGTGAGTTTCGCCAGCACCTGGGCCACGAAGTCGGTGACTTTGTGATTCGCCGACG CGACGGGCTCCACGCTTATCAACTGGCCGTGGTGCTGGACGACGCCTGGCAAGGGGTCACCGATATCGTGCGCGGCGCCGACCTGCTGGACTCCACGCCG CGCCAGCTCTACCTGCAAGAGCTGCTCGGGCTGCCACAACCGCGTTACCTGCACGTGCCGTTGATCACCCAGCCCGACGGGCACAAGCTGGGCAAATCCT ATCGTTCGCCACCGCTGGCGGCCGAGCAGGCTACGCCGCTGCTGTTGCGGGCGTTGCGCGCCTTGGGCCAGCAACCGGGCCTCGAATTGGTCGACGCCAG CCCACGGGCATTGCTGGATTGGGGCGTTCGCCACTGGGAGGCGGCCAAGATCCCGCGCACACTGACCCTGCCTGAAGCGCAAATACGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CGGCCCTTGCAGCTTGGCGCCCATCCGTTACCATCGCCGCACGTTTTCGGGCACGCGCTTAAAATTAAAGAGAGACCGGGATGTACATCTATCGCTTGGT CCTGCTCCTGGTAGTGGGGATTTACCTGTTCTCCCCGGCCATCATGGATTGGTGGATCGACGCCACGGGTGCCTGGTATCGGCCGTATCTGCTCTGGCTG ATCCTGATCGTCGTGACCTTCATCCTGCAGAGCCAAAAAGATGCCGATGAGCTTTAGCCTGACCCAGATGATCCTGATCAGCGCCGCCTACCTGGCGGTG CTGTTCGGCGTGGCCTGGATCAGCGAACGAGGGATGATCCCCCGGGCGATCATCCGCCACCCGCTGACCTACACCCTGTCGCTGGGTGTCTACGCCAGCG CCTGGGCGTTCTATGGCACGGTAGGGCTGGCCTATCAGTACGGCTATGGTTTCCTGTCCAGTTACCTCGGCGTCTCGGGCGCGTTCCTGCTGGCGCCGGT
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Amino Acid Sequence |
>glutamyl-Q tRNA(Asp) ligase
MTPTSPYIGRFAPTPSGHLHFGSLVAALASYLDARAVGGRWLLRMEDLDPPREEPGAQAAILRALESYGFEWDGEMVRQSERHEAYDQVINRLLSQGLAY ACTCSRKQLEAYQGIYPGLCRNAGHGTENAAIRLRVPELVYHFTDRVQGEFRQHLGHEVGDFVIRRRDGLHAYQLAVVLDDAWQGVTDIVRGADLLDSTP RQLYLQELLGLPQPRYLHVPLITQPDGHKLGKSYRSPPLAAEQATPLLLRALRALGQQPGLELVDASPRALLDWGVRHWEAAKIPRTLTLPEAQIR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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