Pseudomonas brassicacearum DF41, CD58_RS23725
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum strain DF41, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCCGCGCCGTTCATGCCCATCAAGGCGTTGCTGGTGGCCAGGCCACGGGCGAGCAACAGCGGCGCTTCCAGTTCCCGCTGGATCAGGCTGGCCTGGGT GCGGGCCAAGGCGCTGAGGCGTTGTTCGATGAGTTGTTCGAACTGTGTCTTGGTCCGCTGTTGCACCATTTCCTGGGTGCGGGCGCCGGCAAACAGCGCG TACAGCACCAGGGCGCCGACCACGCTGAGCACGATGGCACCGGCCAGGGCGGCCACGGAAAACTGGATCGATTTGAATTTCATAAAGGCTCCGGACGCGA AGATGACGCTGGAGCCTGTATCGGCGTTTCTGTGCAACGGCATGAGGCGCTGTTCGTCGGGTGACTGTTATGGCTTCGTGAGTGTCGCAAATGGACTGGA TGGGACTTGTCTGAAAAAACGCCAAACCCGCGCTGTGTATCTGGCGCCGATACAAATCAACGCCTACGATACGCCCACGTTTCCAGGGAGCTTCTTAAGT
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| DNA Sequence for Gene |
>CD58_RS23725
ATGAACAAGACATTGATGGTGTGTGCTCTGAGCGCGGCTTTGCTGCTCGCGGGTTGTCAGTCGGTCAACACCACCAGCGGCGGGGCTGTGGGCGTGGAGC GCAAGCAGTACATGTTCAGCATGCTGTCGACCGCTGAGGTCAACCAGATGTATGCCCAGTCCTATCAAAAGACCATGGGCGAGGCGAGCGCCCAGGGGGT ACTGGACAAGACCAGCAGCGATGCCAAGCGCGTCCAGGCCATTTCCAGCCGGCTGATCAACCAGGCTCCGGTGTTCCGTCCGGATTCGGCGCAGTGGAAC TGGGAAGTGAACCTGATCAAGAGCGATGAGCTCAACGCCAGTTGCGGTCCCGGCGGGAAAATCATTTTCTACACGGGTTTGATCAACAAGCTGAAGCTCA CCGACGATGAAATCGCCGCGATCATCGGCCATGAAATCGCCCACGCCCTGCGCGAGCATGGGCGTGAAGCGATGTCCAAGGCCTATGGCATCGAGATGGC CAAGCAGGGCGCCGGCGCCATATTCGGCCTGGGCCAGGACAGCCTGGCATTGGCCGATACCGTGGCCAACTATGGCATGACCCTGCCCAACAGCCGCGGC AACGAAAACGAAGCCGACCTGATCGGCCTTGAACTGGCCGCCCGCGCTGGCTACAACCCGAATGCCGCGATCACCCTGTGGAACAAAATGGCCAAGGCAT CGGAAGGCGCACCGCCGGAGTTCATGAGCACCCACCCGTCATCGGACAGCCGGATCGCTTCCCTGCAGGCGGCGATTCCGAAGGTGATGCCGCTTTATCA GCAGGCCAAGAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTATTAAGGTTGTTTCCTTGTGGCGAGGGAGCTTGCTCCCGCTCGGTCGCGCAGTGACCGCAAAAGCTTGGCGCTGCTTCGCAACCCAGCGGGAGCGAAC TCCCTCGCCACAAGAGCCTGCATCAACCTGATCAAACCCACCCACTACTCTGCATCGCCTTGTACACCGCCACGATCGCCAGGACGAAAAATGCCGAGGC GGCCAGGCGGCGGATCAGCGTCAGGGGCAGTTTCTCGGCGGCGAAATTGCCCGCCAGCACCACCGGCACGTTGGCAATCAGCATGCCCACAGTGGTGCCG ATGATCACCAGCCACAGTTCCGGGTACTGCGCGGCGAGCATCACCGTGGCGATCTGCGTCTTGTCACCGATTTCCGCCAGGAAAAACGCAATCAGCGTGG TCAGGAATGGTCCGAACTTGCGGGCCGTATTGGCTTCTTCGTCGTCCAGCTTGTCCGGGACCAGGGTCCACAGCGCCGTGGCCGCGAAACTCGCTGCCAG
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| Amino Acid Sequence |
>peptidase M48
MNKTLMVCALSAALLLAGCQSVNTTSGGAVGVERKQYMFSMLSTAEVNQMYAQSYQKTMGEASAQGVLDKTSSDAKRVQAISSRLINQAPVFRPDSAQWN WEVNLIKSDELNASCGPGGKIIFYTGLINKLKLTDDEIAAIIGHEIAHALREHGREAMSKAYGIEMAKQGAGAIFGLGQDSLALADTVANYGMTLPNSRG NENEADLIGLELAARAGYNPNAAITLWNKMAKASEGAPPEFMSTHPSSDSRIASLQAAIPKVMPLYQQAKK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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