Strain | Pseudomonas brassicacearum strain DF41, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
GGAACTGGGGGACAGCGGCAACGCACCGGCCCGGCCACACTTTGCCGACTGGATGGTGCGCGAAGGGTTCGTCAAGGACCGCGCCGAAGCGTTTCGCAAG TGGTTGGGCGCCGGCAAGCTGGGGGACGTCAAGCAGCACTGGCCGACGCTCGAGGAAACCGTCGAGACCCTGCGGGCCGCCGGCGCCTGGGTCAGCCTGG CGCATCCATGGCACTATGATTTCACCCGTAGCAAACGCCGCCGCCTCGTCGCCGACTATATTCAAGCAGGGGGCCATGCCATCGAGGTAGTTAACGGCCA TCAGCCGGCCGAGCAGGTCGGCAGCCTGGCGATTCTGGCCCGAGAGTTCGGCCTGCTGGTCACCGCCGGCAGTGATTTCCATGGCCCTGGAGGCTGGTCC GAGATTGGCGAATACCGCCCGTTGCCGGAAGATCTGCCACCGCTTTGGTGTAGATTCAAACATGATCCCGTTACCGCCGCCGTCTGAACAGGTAGAACAT
|
|
DNA Sequence for Gene |
>CD58_RS22150
GTGAGTCAATTTTTCCAGATTCATCCGGAGAACCCGCAAGCGCGCCTGATCAAACAGGCGGTTGAAATCATCCGTGGCGGTGGTGTGGTGATTTATCCCA CCGACTCCGCCTACGCCATTGGCTGCCAGATCGGCGACAAGAATGCCGTGGAGCGGGTGAGACGCCTGCGTCAGCTGGATGACAAGCACAACTTCGCCTT GATCTGCAGCGACTTGTCGCAGCTGGGCCTGTTCGCCAAGATCGACACCGGCACCTTCCGCCTGCTCAAGGCGCATTTGCCGGGGCCGTACACCTTTATT CTCAACGCCACCCGGGAAGTCCCGCGGCTGTTGCTGCACCCGAAAAAACGCACCATCGGCCTGCGGGTGCCGAGCCATCCCATTGCTCTTGCACTGCTGG CGGAGCTGGGTGAGCCGCTGATGAGTGTGACGCTGATCATGCCTGGCGAGATCGAGCCGATGACCGATCCTTACGAAATGCGCCAGTTGCTCGAACATCA AGTGGACCTGATCATCGACGGCGGTTTCGGCGGCATGGCAGCGTCCACGGTGATCAACCTGGCCGACGGCGAGCCGCAAGTGGTGCGGGTCGGGTGTGGC GATCCGGCGCCGTTCCTGGTCGAGGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
ATGTCCGCTGTGGAAACCGCCGTGGAAGGCGCAGACAGCCAGGCCGGCGCGCAACAGGAGCTGCCGTTTGCCATGGTCTATGGCCAGGCGGTCATGGAAA TGCCCCTGGACCTGTACATTCCGCCGGATGCGCTGGAAGTGTTCCTCGAGGCCTTCGAGGGCCCGCTCGACCTGCTGCTGTACCTGATCCGTAAACAGAA CATCAACATCCTCGACATCCCGGTGGCGGAAATCACCCGCCAATACATGGGCTACGTCGAGCTGATGCAGTCGGTGCGCCTGGAGTTGGCGGCCGAATAC CTGGTGATGGCGGCCATGCTGGCCGAGATCAAGTCGCGGATGCTGCTGCCGCGCTCGGCGGAGGTCGAAGCGGAAGAAGACGACCCGCGTGCCGAGTTGA TCCGCCGCTTGCAGGAGTACGAGCGCTTCAAGGTCGCCGCCGAAGGCCTCGATGGCTTGAACCGGGTCGGACGCGATGTGGTGGTGCCCAAGCTCGATGC
|
|
Amino Acid Sequence |
>hypothetical protein
MSQFFQIHPENPQARLIKQAVEIIRGGGVVIYPTDSAYAIGCQIGDKNAVERVRRLRQLDDKHNFALICSDLSQLGLFAKIDTGTFRLLKAHLPGPYTFI LNATREVPRLLLHPKKRTIGLRVPSHPIALALLAELGEPLMSVTLIMPGEIEPMTDPYEMRQLLEHQVDLIIDGGFGGMAASTVINLADGEPQVVRVGCG DPAPFLVEA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|