Pseudomonas brassicacearum DF41, CD58_RS14085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum strain DF41, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGGTCGCAAGAAGAACTTCATCCTGTTCGCTGTCGGGTCCATGGCCATCGTCCTGGCCTATACGCAACTCCCCATCGATAACACTTGGATGCTCTGGT TGGGCTTTCCACTAGGCTTCTTTGCTTCAGGCATCTTCGCCGGCATGGGCGCATTCCTGACCGAGCTGTTTCCCACCCGTATGCGTGGGTCGGGGCAGGG GTTCTGTTACAACGCCGGGCGTTCCATTGCAGCGCTGTTCCCATTGTTCATCGGTGCGCTGAGCAACACCTTGCCGATCGGTACCGGGATCGGCGTGTTT GCCGCTGGCGCCTATGGTGTGGTGATTCTGGCCGCGTTGAGCTTGCCGGAGACTCGCGGTCGACAGCTCGAATCCTGACCGTCCAAGACGCCTGGGCCGA TTGCCCAGGCGTCGCCAACAACCTTCCAAAAACAACAACCATCGGACGCGATCGCAACGCCCCCGAGCGGGTTCGCTCGCGCCCATAAAAGGAGCACATC
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| DNA Sequence for Gene |
>CD58_RS14085
ATGCGACGTTTCACCTCCACGCCATGGGTTTATACCCCGGTCGGTACCTTGCTCGGCTTGAGCCTCATCGGCGTGCCGAGTGCCCAGGCTGATTTCATCG CCGACAGCAAAGGCAGCCTGGAAGCCCGCAACTTCTACTTCAACCGCGACTTCCGTCAGGAAGGTGCGCGGGACAAGGCCGAAGAATGGGCACAGGGTTT TCTGTTGCGGATCGAGTCCGGATACACCGCCGGGACCGTGGGTTTTGGCCTCGATGCCTTGGGCATGGCCGGTTTCAAGCTGGACTCCGGTGGCGGCACG GCGGGAACCAATCTGTTGCCCGCGGATTTGTCCGGCGGTTCTCAAGATCGCTATGGCGAACTGGGCCTGACCGCCAAGGCGCGCATCTCCAATAGCGTCC TGAAGTTGGGGACGCTGCAAATCAAAGACCCCGCGGTGAGTTCCAACGATACGCGTCTGCTTCCAGGAACCTTCAAGGGTGGGCTGCTGAGTGTGCAGGA GATCGATCGTTTGAAGCTGACCGCCGGGCAACTCACCCAGATCAACTTTGTCGACTCCACCGACTATCAGGACATGACCGCCAACCGAATCGGCGGAACC AGCGACAAGTTCCAGTTCGCCGGCGCGGACTACCAGTTCCTGCCGAACCTCACGGCGCAATACCGATATGGCAAGCTGGAAAATATCTACCAGCAAAACT ACCTTGGCTTCGTCCACACCCTGGACCTGGGAGCAGGGCAGGCGCTCAAGAGCGACGTACGCTATTCGCGCAGTACCGAAGACGGCAACTTCCGTGATAT CGACAACCAAGCCTTCGGCGCCCTGTTTACCTACAGCCTCGGTGGGCATGCGCTGGGCCTGGGCTATCAACGCATGAGTGGCGACGATCCGTTTCCCTAT ATCAGTCGCAGCGATCCATACCTGGTCAACTTCGTGCAGATTGGCGACTTCGCCAACATCGACGAACGTTCCTGGCAAGCCCGCTATGACTACAACTTTG CGGCATTGGGCGTGCCGGGGTTGACCTTCATGACCCGCTACATTTCAGGCGACAACGTGCAACGCGCCGCGCCGGGAGAGGGCAAGGAGTGGGAACGTAA CACTGACATTGCCTATGTAGTGCAGGACGGAAAGTTGAAGGGGTTGGGTGTCAAATGGCGCAATGCCTCGGTGCGCTCGAACTTTGGGAATGATCTGGAT GAGAATCGGTTGATCGTCAGTTATACGGTTGCGCTTTGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTTTTTCAATAACGCCACTCGTTGAGTGGCGTTATTGCAGATCCATCGCACGGGGGACTTGTGGTCAAAGCGGACGCTCAAGAAACAACAAGCGTGCCG CCAACGCAGCCATGACCCCGGCGAAACCATACGTCCCTAGACGCCTTGAAATCCTGCCGCTGAACAGTTTTGCCCTTAGCTGTCCGGCAAAACGACGGCA ACCACGAATAGATAGAGATTGGCTGTATCCGGCATGGAGGTACTCCAAGAGATGAGCCACGACGGTAAGCGAACTGTTGAGCGGGACACATCGTGCCGAT GGAAACCGAAAACCTGATCAACGTACGACCTTGAGTGAAACTGACTCGGTGCCAAAGCACTGGAGGATATTGAACGCAGGAGCCGCATGCGCCAGTTCCT GGCTCAAAATCTGGTGGGTGACCAGGCAGAAACCGTAATATGTTGTTGCGTGTAATGTATATTATGTTAAACGAGATGTTTATGGCGGACGATTCGGATA
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| Amino Acid Sequence |
>porin
MRRFTSTPWVYTPVGTLLGLSLIGVPSAQADFIADSKGSLEARNFYFNRDFRQEGARDKAEEWAQGFLLRIESGYTAGTVGFGLDALGMAGFKLDSGGGT AGTNLLPADLSGGSQDRYGELGLTAKARISNSVLKLGTLQIKDPAVSSNDTRLLPGTFKGGLLSVQEIDRLKLTAGQLTQINFVDSTDYQDMTANRIGGT SDKFQFAGADYQFLPNLTAQYRYGKLENIYQQNYLGFVHTLDLGAGQALKSDVRYSRSTEDGNFRDIDNQAFGALFTYSLGGHALGLGYQRMSGDDPFPY ISRSDPYLVNFVQIGDFANIDERSWQARYDYNFAALGVPGLTFMTRYISGDNVQRAAPGEGKEWERNTDIAYVVQDGKLKGLGVKWRNASVRSNFGNDLD ENRLIVSYTVALW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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