Pseudomonas brassicacearum DF41, CD58_RS12010

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas brassicacearum strain DF41, complete genome. [Details]
DNA Sequence Upstream of Gene
CTGTGCACCAACCGACACCTGGCCCAGAGCCTGCCGGCCGGCACCCCGCTGGGGTTCGAGCGTCCGGGGCCGGTGGCCTGGGCCCGCCTGCGCAACCCTC CCAGCCCCCAAAGCCTGCCGCGCCTGGACGGTGAGTCGCGCTGGCGGTTGGTGTCGCAATTGACGCTGAACCATTTATCACTGGTCGAAGGTCCCCAGGC GCTGGACGCGCTGCGCGAGATTCTCGAACTGCACAATTTGCGCGACGAGGCCAGTGCCCGTCGCCAGATCGAAGGGGTATCGGGGCTGGGCTGCGAGCGC GTCATCGCCCACGTCGGCGAAGACGCCTGGCGTGGCTGGCGTAACGGGCTGGAAGTGCGCCTGCAACTGGATCCGCAGCATTTCGTCGGCAGCAGCGCCG TGCTGTTCTCCGGGGTACTGGCGCAGTTCTTTTCCCTTTATGCCACCGCCAATCGCTTCGTGCGCACAGCGCTGGTTCAGTCCGACAAGGAGGTGAAAAC
DNA Sequence for Gene
>CD58_RS12010
ATGGCAACCCCAAGCCGGCAAACCCCTGACGCTCTGAACCTGAGTCAACGGCTGCGGCGTGACCCACAACGCTTCGAATGGCTCCAGGCCTTATTGCTGC TGGAACGCGAACATCCCCAGGCCGAACCCTTGGGCAGCGGCACCGCGCCGCACGCCGAAGCCTTGCGCCTGCGCGGGCCGTTGACGCCGCTGTTCGCCGC CAGTGAAGTCGAAAGCCTGAGCCAGGAACCCGGTTCGCAACCGGTCCTGACCACGCCGATCTTTGGCCTCGGCGGCCCCGACGGTCCCCTACCCTACGCT TATCAGGAGTGGCTGCAACAACGGGCGCGGGCGCGGGATCATGCGCCCGCGGAATTTCTCGATCTGTTCCAGCATCGCTTGCTCAGCCTGCTCTATAAGG TGATGCGCAAGCATCGCATCGCCCTGGGCTTCACCGCGCCTGGTGCCTCTGCGGTGCACGCGCAATTGCGAGCCCTGACCGGCCTGTTGCCCAAGGCTTT GCAGGAGCGCCAGGCCGCGCCTGATTCCGCCGTGCTGGCCTGCACCGCACTGTACGCCGATGGCCGGCGCTCCCTGGCCGGGTTTGCGGCGATTGTCCGC GAGCAGTTCGGGCTGCCGGTGGAGCTGACGGCCTACGAAGGGGGTTGGCGGGACATCCCGTCCGCCAGCCGCAGCCGCTTGCAGCCGGGCGGCCGCAACC TGCGCCTGGGCCGCAGCGCCGTGGCCGGCACCCGGGTCTGGGACGAACATGCCGGTGTGCGCCTGACCCTTGGCCCGCTGAGCGCCGCCCAGGCCAATGG CTTACTGCCCAACGGCGAGACCCATCCGTTACTCGCCAGCCTGTATGCCTTGTATTTCGGCCCCGACCTGGACTGCACCCTGGTGCTACTGGTCCGTGGT GCCGGCCCTCTGCAACTGGGCCATCAAGCGCCGCCACGGTTGAACTGGAACGGCGGTCTGCAACGTCAATCCAACCTGACCGTGCAACGGATCGTCACCC GCCTTCGTCAGCCGGAGATCGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AATGGAACTGGCCAGCCTGATCGGACGCCTCAACCCGGACAACCGTCGCGCCCTGGAACGAGCCGCGCAACGCTGCATGCAGCGCAGCCATCACTACGTG GAAATCGAACACCTGCTGCTGGAGTTGCTGGACATCGAAGGCGGCGACTTCGCTTGCCTGCTGCCGCGCTTTGGCCTGGAACGTGATGCGGTGGCGGCGG AAACCAACAAGGCCCTGGACCTGTTCAAATCCGGCAGCACCCGTACGCCCGCCCTGTCGGCGCAAACCATCGGCCTGCTGGAAGACGCCGTGGTCCAGGC CAGTGTGTTGGGCCTGGACAGCATTCGCTCCGGACTGTTGCTGTTGGCGCTGCTGGACCGTGACGAGCGTCGCAGCCTGCTGCTCAACAGCGCCTCGTCA TTGCTGCGCATTCCCCGGGACGCCCTGCGCGCCCATTTACTGGAGTGGACTGAGAGCTCCCGCGAACATGTCGGCGGCGTGCGTGCGGTCAAACCCGGTG
Amino Acid Sequence
>type VI secretion protein
MATPSRQTPDALNLSQRLRRDPQRFEWLQALLLLEREHPQAEPLGSGTAPHAEALRLRGPLTPLFAASEVESLSQEPGSQPVLTTPIFGLGGPDGPLPYA YQEWLQQRARARDHAPAEFLDLFQHRLLSLLYKVMRKHRIALGFTAPGASAVHAQLRALTGLLPKALQERQAAPDSAVLACTALYADGRRSLAGFAAIVR EQFGLPVELTAYEGGWRDIPSASRSRLQPGGRNLRLGRSAVAGTRVWDEHAGVRLTLGPLSAAQANGLLPNGETHPLLASLYALYFGPDLDCTLVLLVRG AGPLQLGHQAPPRLNWNGGLQRQSNLTVQRIVTRLRQPEIA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site