Strain | Pseudomonas brassicacearum strain DF41, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
GAGCGCGCAGCAGGCTTTCGTGAATCTGGCCGCGCAATTCATCCGCCTGATCACCCGCCAGCGTCGCGGTGTGATCCAGCAACCGCTCGGTGTCGCTGAC CAGTGTCTGAAAATCTTCCATCAGGATTTCTTGAGCAGTCTTTGCCTGGGTTCTGGCCATCGGTGAATCTCCGTAAGTGACGTCTGAAGCGTTCGAGTAT GAGCCTTGTCGGAAGGTTCAGTGAAAGTGACTGGTACAACTTTTGCTCAGGCTTTTGCCATGTACTGGTGCGACACCCTGCACCAGCGCGCTGAAGCTGG GCACAACCCCGCGAAACCTTAACCCAAATAATCAAAACCCGCGAAGCGCCTCAAAGCGGGACGTCGTGTTGTCAGTTTTTTCGCACCAAAGCGGTTCACA AGCTTTCGACAGGCATGTGTGTAGGTTCAACTTGGTGCGTAGACAGGGCGAGCGAACCGGTTTGGTGCTTTTTTCAACTTTTTCAGGTCTGCCCAACACC
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DNA Sequence for Gene |
>CD58_RS08750
ATGGAAAATATGCAAAGCGCTGTGGAGAATCTCGTCCACAGCTCCAACACGCTATTCATCTTGCTCGGCGCGGTCATGGTTCTGGCGATGCATGCCGGTT TTGCGTTCCTTGAAGTGGGAACCGTCCGGCAAAAGAACCAGGTCAACGCATTGTCCAAAATCCTCAGCGACTTCGCTGTCTCGACCTTGGCCTATTTTTT CATAGGTTACTGGATTTCCTACGGCGTGACCTTTCTGCAACCGGCAGCGGTGCTCAGCGCCGATCATGGCTACAGCCTGGTGAAGTTTTTCTTCCTGCTG ACATTTGCCGCCGCGATCCCGGCCATTATCTCCGGCGGGATCGCCGAACGTGCCCGGTTTGCGCCGCAGTTATGCGCCACGGTACTGATCGTGGCGTTTG TCTATCCGTTCTTCGAAGGTTTGATCTGGAACGGCAATTTCGGCCTGCAAGCCTGGTTGCAAGCGCAGTTCGGTGCCAGCTTCCACGACTTTGCCGGTTC CGTGGTGGTGCATGCCATGGGCGGCTGGCTGGCATTGGCCGCCGTGCTTTTGCTCGGTCCGCGTAACGGCCGCTACCGGGACGGTCGCCTGGTGGCGTTC GCGCCATCGAGCATTCCGTTCCTGGCCCTGGGGTCGTGGATCCTGATTGTCGGCTGGTTCGGTTTCAACGTGATGAGTGCCCAGACCCTGCCTGGGGTGA GTGGGCTGGTAGCGGTCAATTCATTAATGGCCATGGTGGGCGGCACCGTGGCGGCACTGATTGTCGGGCGCAACGACCCGGGCTTTCTGCACAACGGCCC ATTGGCCGGCTTGGTGGCGGTCTGCGCCGGTTCCGACCTGATGCACCCGGTAGGCGCGCTGGCGACCGGCGTCATTGCCGGTGCCTTGTTTGTCTGGTGT TTCACCGCTGCCCAGGGCAAATGGAAAATCGACGATGTGCTCGGCGTCTGGCCGTTGCATGGGCTGTGTGGTGTCTGGGGCGGCATCGCTTGCGGCATCT TCGGCCAGGGCGCCTTGGGTGGCCTGGGAGGAGTCAGTTTGATCAGCCAATTGATCGGCACGGCACTGGGTGTTTTCATCGCCCTGGCCGGTGGGTTCCT GGTCTATGGGGTGATCAAGTTCGTGCTGGGGCTACGCCTGACCCAGGAAGAGGAGTACTACGGCGCCGACCTGTCGATTCACAAGATCGGCGCGGTCAGC CAGGACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCATTGCGCTACGGCTCCTTGTCCTGATTGCCCGGGTAAAAGCCGTGCAGCAAACGATAGCGGTCATGGCGGACCTGATCCACATGCTGTCGGACCTGCT GCTCGGGCAGGCCAAGCATGATCAGGGCGTGGGAAGCCAGCATGAGACTCGACTCCAGCAGCTCCGGGACCACTTCGCTGGCCCCGGCAGCCTGCAACTC GGCCAGTTGACTGTCATCGCGGGTACGCACCAGGATCGGCACCTTCGGGTTGAGTCTCCGGGCCTCCTTGAGCACCGTGATGGCAATGTCCGTCTTGTCC ACTGCAATCACCAGTAACCTGGCGCGGCTCAGTCCGACGGCGGCCAGCAGGTCCCCCCGTCGTGAATCCCCATAATGCACGCAGTTTTCCCCAACGATGG CCTCCTGGATAATGACCGGGTCATCATCCAGGGCAACGAACGCCTGGTTTTCGCGGCGCAGGAATCGCCCGATGGACTGGCCAACGCGCCCATACCCGCA
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Amino Acid Sequence |
>ammonium transporter
MENMQSAVENLVHSSNTLFILLGAVMVLAMHAGFAFLEVGTVRQKNQVNALSKILSDFAVSTLAYFFIGYWISYGVTFLQPAAVLSADHGYSLVKFFFLL TFAAAIPAIISGGIAERARFAPQLCATVLIVAFVYPFFEGLIWNGNFGLQAWLQAQFGASFHDFAGSVVVHAMGGWLALAAVLLLGPRNGRYRDGRLVAF APSSIPFLALGSWILIVGWFGFNVMSAQTLPGVSGLVAVNSLMAMVGGTVAALIVGRNDPGFLHNGPLAGLVAVCAGSDLMHPVGALATGVIAGALFVWC FTAAQGKWKIDDVLGVWPLHGLCGVWGGIACGIFGQGALGGLGGVSLISQLIGTALGVFIALAGGFLVYGVIKFVLGLRLTQEEEYYGADLSIHKIGAVS QD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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