Pseudomonas brassicacearum DF41, CD58_RS08325
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum strain DF41, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGCAGATCAATAATCTACTCGGGGCCTCCGGCTTGTGTGTGTAATCGGTCTGGGCTCTCTACCTAAAGGATCTGAATGAACAAGCTCTTTCTGGTATT GACCATCCTGGTGCTGGTGGGGTGCTCTACAAGCGCCAAGACTCACGCAGTGCGTGGTGTCAGCGGTATCGAGGTCGACTGCTCAGGATTGGGTTCCGGT TGGGAGAAGTGCCATAAGCGGGCTGCGAGGGAGTGCAAGGGTGCAGGCTACAAGGTCATTACCCGATCCGACGACGCGAAGGATGAAGACCAATACCCCT TTGGTTTCAATCCCGCAGGTTATCTGACCCGAACGATGTTAGTCATCTGTCGGTAGCTGGGGGAAAGTCCCTCTATCTGCAGGGGAAGAACCGCAGGGGA ATGAAGAAGAATGTCAATACTTGGGCTGTTCAAATCCCTCCGACCATGCTAAAACCTTTTCAAGCGATTTTCCTAGCTGCTTGAAAAAGAAGGGAAAAAT
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| DNA Sequence for Gene |
>CD58_RS08325
ATGACGAAGTCGGAGTTGATCGAACGAATTGTCACCCATCAAGGGCTACTCTCATCCAAGGATGTGGAGCTGGCTATCAAGACCATGCTTGAGCAAATGT CCCAATGCCTGGCTACGGGAGATCGTATCGAGATCCGTGGTTTCGGCAGCTTCTCCCTCCACTATCGCGCGCCGCGTGTGGGGCGCAATCCTAAGACCGG CCAGTCCGTCAGTCTTGATGGGAAATTTGTCCCTCATTTCAAGCCGGGCAAAGAGCTTAGGGATCGCGTGAATGAGGAGGAGGGGGATGAGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGGGCGTCCAGGAAAGGGCTATTCATGTGGAACTTCAAACGTCTGGCGATGGTCGTACTTGCGGTTCTCGCCGCCTCAGCTATTGTTCTGTTCGTGCTT GAAAATCATCAGCCGGTCGCGCTCTTGTTCTTGGGCTGGTCAGCCCCGCAGCTTCCGGTTTCAGTTTTCGTGCTGTTGGCGTTTCTCGCAGGTATGCTGA TCGGTCCGTTACTTACGTGGTTCATGAGTGCGCGTCGGCGGTTGAAATAATGGATGTGTGAGCCCAGGAGTCTTGGAGTAAGGATCACTGCCTACAAATT TTTCTGACTTTGGGTATTTTTTTGTTCGTATTTAATTTGACTCAGTTTGCTGTTTTTTCCGTTGGAGACCTACCCGTCTTGCCTTTTGATGCGTCCAGTT TGACTGCAAGCGCAATCTCAGAAAAAGGAAGCGAGGCCATCCATGCAAAATAATCGTGCTGAAATACGTGGCTCGGATGAGATTGATCTGATTGAGCTTG
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| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVGRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEEEGDEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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