Pseudomonas brassicacearum DF41, CD58_RS08245
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum strain DF41, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGGCAGCGTCAACGGCTGGCCATCGCCCGCATGGTGTTGGCCAACCCTCGGGTGGTGATTCTCGATGAGGCCACCTCGGCACTGGATGCCGCCACTGAGT ACAACCTTCATCAGGCGCTGGCGCGATTCCTCAGCGGGCGTACCACGCTGATCATCGCCCACCGGTTGTCGGCCGTGAAACAGGCTGATCGGGTGCTGGT GTTTGACGGCGGTCAAATCGCTGAAGACGGTGACCATCTACAGCTGATTGCCGAGGGTGGTTTGTACGCCCGACTCTATGGTCACCTGCAACAAATACAG CAGCCTTGAGTTTCCTGCGCTTTTCTGCGCTTAGTATCTTAAAAAACTCAAGGAAACTCCCCGACTTCCTCCGAATTTCAAGCCAAAGCCCTTCGTTCCT TCATCTGGTCATTCGAAGGGTCGAAAACTAGCCTAGGCTGTGGAGTCAGGAGCGGAATTCTCGCGGGTGTTCATCTGGCAGTACCTGTGCAAGGGACCTC
|
|
| DNA Sequence for Gene |
>CD58_RS08245
ATGAAGCAAAAGCAGACTCTCGGAACGCCACGGCTGCTGGGTATTGTCTGGCCCTTTATTGCCGTTGTGTTATTTCAAGCATTACTTGGAGGCGTCAGCC TTTACGTATTGTCTGCGGTTCGCGGCTATGTGGCTGGAGAAAGCCTTTGGTCCAAGGGCCAGAAAGACGCCATCTACTACCTCAATCTCTATGCCGACAG CCGTGACGAGGCGATTTTCCGTAAGTACCAGCAAGCCATCGCCGTACCCGAGGGCGGCCATGAGTTGCGAGTGGCGCTCGACCGTGAGCCGCCGGACCTG GACGCGGCAAGGGCCGGCATCCTCAAGGGCGGCAACCACCCGGACGACGTGTCCAGCGTGATCTGGCTTTATCTGAATTTTCGACACTTCAGTTACCTGG AAGAGGCCATCGATCTCTGGACGGTGGGTGACGGCTATCTGATCGAGCTGGATAACGTCGCCCGGCAGATGCACGACAGCATTACCGCAGGCCAGGCGTC GGAGAGCGATATTCGTAGCTGGAAGGCCCAAATCTTTGCGATCAACGATTCCGTCACCCCGGCTGCCAAGGCTTTCAGCGATGCGCTGGGCGAGGGGTCG CGCTTTATCCTGCGCCTGTTGCTGGTGACCAACTTCGCCACGGCCCTTGGATTGATTGTCCTGGCGTTATTGCGTACGCATAAATTGCTGGCCCAGCGGC AGGTCTTCGCCAATGCGCTGCAACTGGAGAAGGAGCGTGCGCAGATCACCCTGCAATCCATCGGCGACGGGGTGATCACCACCGACGTTGAAGGCGCCAT TGCCTACATGAACCCCGCTGCCGAAGCGATGACCCACTGGAAAGCCGAACACGCCACGGGGCTGCCTTTGGCGGCGCTGTTCAATCTGCTCGACGACAAC GCACAGACCGAGGGACTGACCCTGATCGAGCACATTCTCAGCGGTCGGCTCAGCGGCGCCAGCGAGCATTCCAAGTTGATCCAGCGCCTGGACGGCAGCA CGGTGTCGGTGACCCTGGTGGGGGCGCCGATCCGTCATGCGGGCAAGGTCAGTGGCGCCGTACTGGTGTTGCATGACATGACCCAGGAACGCCAATACAT CGCCAACCTGTCGTGGCAGGCCACCCATGACGCCCTGACGGGCCTGGCGAACCGTCGGGAGTTCGAATATCGCCTTGAGCAGGCCTTGCACAACCTCACC CGTCAGGTCGGGCGCCATGCCTTGATGTTTCTCGATCTGGATCAGTTCAAATTGGTCAACGACACTTGCGGCCACGCGGCGGGTGACGAATTGTTGCGGC ATATCTGCGCCTTGTTGCAATCGGGCCTGCGGGAAAATGACACCCTGGCCCGGCTGGGCGGCGATGAGTTTGGCATTTTGCTGGAGAATTGTTCGCCGGA GGCCGCGGAAAAAATCGCCGAGGGGCTGCGCCAGACGGTGCAGAACCTGCACTTTGTCTGGAAGGGCCGGCCGTTTGTCACCACTGTGAGCATTGGCCTG GTGCACATCGCCCAGAGCCCGACCACCCTGGAGGCGTCCCTGCGCGCCGCCGACATGGCTTGCTACATGGCCAAGGAGAAGGGGCGTAACCGGGTCCAGG TCTATCACGCCGACGACTCGGAGTTGTCCCTGCGCTTTGGTGAAATGGCCTGGGTCCAGCGTCTGCATATGGCGTTGGAGGAAAACCGCTTCTGTCTTTA CGCCCAGGAAATCGCCGCGCTGGGCCCGGGCGACCATGGTGGTGGGCATATTGAAATCCTGCTGCGCCTGCATGACGAAGCCGGGCGGATGATCTTGCCG GACAGTTTCATCCCAGCGGCAGAACGCTATGGCCTGATGACCTCCCTGGACCGTTGGGTGGTGGAGAACGTCTTCAAGATCATCCGCCAATGCCTGAATG AGTCGCGACAAGAGCCAATGGCCATGTGTGCGATTAATCTGTCAGGTACTACTATCGGAGATCAGGCGTTCCTGGACTTCCTGCGTAAACAGTTCGTGGC CTACTCGATCCCGCCAGAAATGATTTGTTTTGAAATTACCGAGACCAGTGCCATTTCGAATCTGGGCAGCGCGATCCGCTTTATCAATGAACTCAAGGGC TTGGGCTGCTATTTCTCGCTGGATGACTTTTGCGCCGGAATGTCTTCATTCGCTTACCTGAAACATTTACCTGTAGACTTCCTGAAGATCGACGGGAGTT TCGTAAAGGATATGCTGGACGACCCGATTAACCGTGCAATGGTCGAGGTGATCAATCACATCGGCCACGTCATGGGTAAGCGCACCATTGCCGAGTTTGT TGAGACCACCCAGATCGAGCAGGCATTGCTGGAGATTGGTGTGGATTACGCTCAAGGGTATGTGATCGAACGCCCGCAATTGTTTACCTGTGACACGTTG CAATGTCGGCCGGCCCGGCCTCAGCCGTTGTTATTCAAGGCCCCCGGCACGTTCCGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACTTCTTTGTTGATCCGGAAAATCACAATCAAAAGGAGCCCGACAGTGATCGACATATTCAACCGAACAGGCCCGCTCATGGACCCCACGAGCTATCCGA AATGGGCACAACAGCTCATTACCGATTGCAGCGAGAGCAAGCGCCGGGTTGTCGAACACGAGCTGTATCAACGCATGCGCGATAACAAGCTCAGCGCCAA GACCATGCGCCACTACCTCATTGGTGGTTGGCCGGTCGTTGAACAGTTCGCTTTATACATGGCACAAAACCTCACCAAGACCCGCTTTGCCCGCCATCCC GGCGAGGACATGGCGCGTCGCTGGCTGATGCGCAACATTCGTGTCGAACTCAACCATGCCGATTACTGGGTGAACTGGAGCGCCGCCCATGGCGTGTCCC TGGAAGATCTGCAAGCGCAACAGGTGGCGCCCGAGCTTCATGCCTTGAGCCACTGGTGTTGGCACACCAGCTCGTCGGATTCATTGATCGTGGCCATCGC
|
|
| Amino Acid Sequence |
>membrane protein
MKQKQTLGTPRLLGIVWPFIAVVLFQALLGGVSLYVLSAVRGYVAGESLWSKGQKDAIYYLNLYADSRDEAIFRKYQQAIAVPEGGHELRVALDREPPDL DAARAGILKGGNHPDDVSSVIWLYLNFRHFSYLEEAIDLWTVGDGYLIELDNVARQMHDSITAGQASESDIRSWKAQIFAINDSVTPAAKAFSDALGEGS RFILRLLLVTNFATALGLIVLALLRTHKLLAQRQVFANALQLEKERAQITLQSIGDGVITTDVEGAIAYMNPAAEAMTHWKAEHATGLPLAALFNLLDDN AQTEGLTLIEHILSGRLSGASEHSKLIQRLDGSTVSVTLVGAPIRHAGKVSGAVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALHNLT RQVGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLRENDTLARLGGDEFGILLENCSPEAAEKIAEGLRQTVQNLHFVWKGRPFVTTVSIGL VHIAQSPTTLEASLRAADMACYMAKEKGRNRVQVYHADDSELSLRFGEMAWVQRLHMALEENRFCLYAQEIAALGPGDHGGGHIEILLRLHDEAGRMILP DSFIPAAERYGLMTSLDRWVVENVFKIIRQCLNESRQEPMAMCAINLSGTTIGDQAFLDFLRKQFVAYSIPPEMICFEITETSAISNLGSAIRFINELKG LGCYFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETTQIEQALLEIGVDYAQGYVIERPQLFTCDTL QCRPARPQPLLFKAPGTFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|