Strain | Pseudomonas brassicacearum strain DF41, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
GGGGCCTGCGCCAACCGATGTGGCGCCTGCGCTGGCATCGTCTGTTGCTCAGGTTGCCGCTGGTGGGCGAGGTATTGCGGGCAATGGAAGCGGCCCGGTT CGCCAGCACCCTGGCGATCCTGAGCAAAAGCGCCGTGCCTTTGGTGGAGGCCTTGCACATTGCAGCGCAGGTGATCGGCAACCTGACGATCCGCGCCCGC ATGGCCGACGTCGCCCGTTCGGTCCGCGAGGGCGGGACCCTGACCCGTGGCCTGGAGCAGGGCGGTGACATCCCGCCCTTGATGCTGCACATGATCGCCA GCGGCGAGCGGGCCGGCGAACTCGACAGCATGCTGGCCCGAGCCGCCGAACAACAGGAGGCCAGCCTCGCGGCGCGCATCACGTTGGTGGTGAGCCTTTT CGAACCGGCCATGTTGGTACTGATGGGCGGCATCGTGCTGCTGATCGTCATGGCCATCCTGCTTCCTATTTTGAGCCTCAACCAATTGGTGAATTGACCC
|
|
DNA Sequence for Gene |
>CD58_RS02060
ATGACATTTCAAAACAACCGACCTCAACGCGGCTTTACCCTGATCGAGATCATGGTGGTAGTGGTCATCATCGGTGTCCTTGGCGCCATCGTGGTGCCGC AGTTCATGAGCCGGCCCGATCAAGCCAAGGTCACGGCCGCCCGTACCGATATCCAGGCGATTGCCACGGCCTTGGAAATGTATCGCCTCGACAATGCGCA TTACCCTTCGACCCAGCAAGGCCTGGAAGCGCTGAGCAAGCGTCCGTCCGGCACGCCCGCGGCAAGGAACTGGAACCCCCAGGGTTATTTGAAAGCCCTG CCGATCGACCCTTGGGGCACGCCTTATCAGTTTCTCAACCCTGGTCTCAAATCGCTCGACGGCAGCTATGACCTGTACTCGCTGGGCGCCGATGGCGTGC CGGGCGGTGACGGGTTCGCTGCCGACATCGGCAACTGGGCGGAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
ACATGGGGCGTCATAGTCGAGGTTTCACCTTGTTGGAACTGATGGTCGTCATCGTATTGATCGGGGCACTGCTGGGCATGGTCAGCCTTGCCATCGGCCC GAGCCCGGCGCGCGAAGCCCGACAGCAAGCCCAGGATTTCATCCGGGTGGTGCAGCAATTGCGTGAGCGGGCGGTGTTGGATGGGCAGGAATACGGTGTG CGCATACAGCCTCGTGGTTATCAGGCGGTGCGACTGGAGACTCGGGGCTGGACCGCGGTGTCGGCGTTACACCGGCTGCCTGAAACGCTGACGCTTGGAC TGGAGCAAGACGGCCAGCGCCTGACCCTCGATGAGGCTCAAGGCTCCCCCCAGTTGCTGATGCTCAGCAGTGATGAGATCAGTCCGTTCCGGTTATTCAT CAAGGTCGCTGGCCAGACTGTTTCTCAGGTATTGAGTGATGGTCTCGCCCAGCCGCTGATCGATGAGTGACGCGCGCAGGCTGGCCGCCGACTGCCAGGG
|
|
Amino Acid Sequence |
>secretion system protein G
MTFQNNRPQRGFTLIEIMVVVVIIGVLGAIVVPQFMSRPDQAKVTAARTDIQAIATALEMYRLDNAHYPSTQQGLEALSKRPSGTPAARNWNPQGYLKAL PIDPWGTPYQFLNPGLKSLDGSYDLYSLGADGVPGGDGFAADIGNWAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|