Pseudomonas brassicacearum DF41, CD58_RS00860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum strain DF41, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAGCTCGAGCAGCTCAAGGTGGTGAACCTGTTCTTCAACAAACAGGTGCGCTACGTGGAAGACATCGACCTGTGGCATGAGGTCGACTATTGGGAAACGC CGATCCAGGCCCTGTGGAAGGGCGCCGGTGATTGCGAGGACTACGCCATCGCCAAGTACTTCAGCCTGCGTCATCTCGGGGTGTCCAGTGACAAGCTGCG CATCACCTACGTCAAGGCCTTGCGGCAGAACCGTGCGCACATGGTGCTCACCTATTACGCCACGCCCGAGGCGATGCCGCTGGTACTCGACAGCCTGATC GACGGCATCCAGCCGGCCAGCCAGCGAACCGACCTGTTGCCGGTCTACTCTTTCAATGCCGAAGGGCTGTGGCTGCCGGGTGCCAAGGGCAACAAAAAAG TGGGTGACACCAAACGCCTGTCTCGATGGCAGGACGTGTTGAAGAAAATGCAGGCCGAGGGTTTTCCGGTCGAGACGACTAACTAGGAGCGCGCGCTCAG
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| DNA Sequence for Gene |
>CD58_RS00860
ATGTCCTTGTTCAAACAGCTGTTGATCGCTATCTGTCTGTTCCTGGTGGTTGCCTTCAGCGGCAGCTTCATGGTCAGCCTGGAGAGTTCGCGGGCCCAGT ACGTCAACCAGTTGCGCTCCCACGCCCAGGACGCGGCCACGGCGCTGGCGCTGTCGTTGACGCCGAACATCGACGACCCGGCGATGGTGGAGCTGATGGT CAGCTCGATCTTCGACAGCGGCTACTACGCCAGCATCCGCGTGGTCGACGTGGCGACCGACAAGACCCTGGTCGAGCGCACCGGCACGCCGGACGCCGGC AGCGTGCCGCAGTGGTTCATTAAGCTCATTGGCCTGGAGCCGGCCGGTGGCGATGCCATCGTCAGCCGCGGCTGGGAGCAGGCGGCGCGAGTCGAAGTGG TCAGCCACCCGATGTTCGCCCTCGCCAAGCTCTGGCAGAGCGCATTGGGCAGCCTGGGCTGGTTGTTGCTGTGCGGTGCCGTGAGCGCGGTGCTGGGGGC CTTGCTGCTGCGTCGCCAGCTCAAGCCGCTGGATTACATGGTGCATCAATCCCATGCCATTGCCCGGCGCGAATTCTTGAGCCTGCCGGAGCTGCCGCGC ACCCCTGAGTTGCGTCGTGTGGTGCAGGCGATGAACCAGATGGTCGAGAAGCTCAAGGCGCTGTTCCAGGAGCAGGCCGAGCGCAGCGAGAAACTGCGGG TCGAGTCCTACCAGGACAACCTGACGGGCCTGGCCAACCGGCGTTACTTCGAAATGCAGCTCAATGCCCGGGTGAGTAACCCGGAGCAGGCCAGTTCCGG TTATCTGCTGTTGCTGCGGGTCAAGGACCTGGCCGGTTTGAACCAGCGCCTGGGCGGGCAGCGCACGGACCAGTTACTCATGGCCGTGGGCGAGCAATTG CTGCGTGAGTGCGCCCGGCATCCGGAAACCCACAACCTGGTGACGCGCATCCGCGGCGGCGAGTTCGCCGTGCTGGCGCCAGGGCTGGTCCGTGACGAAG CGCTGCAATTGGCGCAGAACCTCGAAAACGCCTTGGCGAGCTTGCACGCCACTGGCGCGACCGATGTGGCCTCGGTGGCTTCCATCGGACTGGCGCCGTT CATTCATGGCGACTCGCCGCAAGCGGTGCTCCAGCTCGGCGACCAGGCTCTTGCCCAGGCCGAGAGCCAGGGTGAGCCGGGTTGGGCGTGCCTGGACCAT AGCGCGTCGGCCAGCGTTGGCGACGATCACCATGCCTGGCATACGTTGCTCGACCAGGCGTTGAGTCATCAGCGTTTTGAGCTGTACTTCCAACCGGTGG TGGCCGCTCAGGACACCCAAGTGGTGTTGCATTACAAAGTTCTGTCGCGATTGCTGGATGAGCACGGCCAGACCATTCCCGCTGGGCGCTTCCTGCCCTG GCTGGAGCGCTTTGGCTGGACTGCGCGGTTGGACCGCTTGATGCTTGAACAAGTGCTCAAGCAGATGGCTGGGCACGAACAGTCCCTGGCGCTGAACCTG TCCTCCGCGACCCTGGCCGACCCTCAGGCGCTGAATAAAATCTTTGAAATCCTGCGGGCCCATTCCAACCTCGGGCCGCGCTTGACCCTGGAGATTGGTG AAGAGCAATTGCCAGAGCAAGCGGTGCTGGAGCAGTTGACCCGGCGTCTGCGCGAACTTGGCTTCTCCCTGAGCCTGCAGCGCTTTGGTGGGCGGTTCAG CATGATCGGCAACTTGTCGCGGCTGGGGTTGGCCTACTTGAAAATCGATGGCAGTTACATTCGTGCCATTGATCAGGAGAGTGACAAGCGTCTGTTCATC GAGGCTATCCAGCGTGCTGCTCACAGTATTGACCTGCCGTTGATTGCCGAGCGGGTGGAGACTGATGGGGAGCTGGCGGTGATTCGGGAGATGGGGTTGT TTGGGGTGCAGGGGCAGTTGGTTGGGGAGCCTCGGCGTTGGGGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTTGGTGACGAAGCGGGCTGTAGCCTTTTGACCGAGTACATATTCATTGCTGCGGTAACGGCCACTTAGGGTTCCGCCCTGACGGCGGGTCACTTTCG AAGAGCGAAAGTAAGCAAAGCGCTTTTGCCCCACCACTCGGTGCCTCGCCTAGGCTCGGCATCGAGTGGTGGGGCAAAAGCGCTTTGCTTACTTTTGCGC TTCTCAAAAGTGAGCCGCTGTAAGAGCGGAACCGCCAGTAGCCGTTACCGCAGAAACGGATATACACCCCCTCCAAAAGCAAGGTCCTAGGAGATTTCCT TCAAGTTGTAGCGAACTTGGTGAACTTGTCCGGCGTCTGCCTCATGGCTAGCCTGGGTTTGTCACTGAAAAAACGGTGACACGGACGTGCAAGTCCGGAA TATCTGTTTAGGGCGAAACGGCCCATGCCATTCAGCGACCTCATTTGGACTCGCTGTGTAGCAAAGGCTCCTTACTAGTCGTTTAGGAGTACCCCAATGA
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| Amino Acid Sequence |
>DeoR family transcriptional regulator
MSLFKQLLIAICLFLVVAFSGSFMVSLESSRAQYVNQLRSHAQDAATALALSLTPNIDDPAMVELMVSSIFDSGYYASIRVVDVATDKTLVERTGTPDAG SVPQWFIKLIGLEPAGGDAIVSRGWEQAARVEVVSHPMFALAKLWQSALGSLGWLLLCGAVSAVLGALLLRRQLKPLDYMVHQSHAIARREFLSLPELPR TPELRRVVQAMNQMVEKLKALFQEQAERSEKLRVESYQDNLTGLANRRYFEMQLNARVSNPEQASSGYLLLLRVKDLAGLNQRLGGQRTDQLLMAVGEQL LRECARHPETHNLVTRIRGGEFAVLAPGLVRDEALQLAQNLENALASLHATGATDVASVASIGLAPFIHGDSPQAVLQLGDQALAQAESQGEPGWACLDH SASASVGDDHHAWHTLLDQALSHQRFELYFQPVVAAQDTQVVLHYKVLSRLLDEHGQTIPAGRFLPWLERFGWTARLDRLMLEQVLKQMAGHEQSLALNL SSATLADPQALNKIFEILRAHSNLGPRLTLEIGEEQLPEQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLSRLGLAYLKIDGSYIRAIDQESDKRLFI EAIQRAAHSIDLPLIAERVETDGELAVIREMGLFGVQGQLVGEPRRWG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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