Pseudomonas brassicacearum DF41, CD58_RS00380
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas brassicacearum strain DF41, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTCAAGGTCAGCACCCCCATCAGCGCCGAAGACACCGGTGGCAGCCTGCACGACCGCCTTGCGCTGATCGGCCCGCCCGCCGTGGTCGAGGCCATTGCCG GCCTGGCTGCCGGCACGCTGGAAGGCGAAGTGCAGGACGACAGCCTCGCCACTTACGCACACAAATTGAACAAAGACGAAGCCCGCATCGACTGGAGTCG CCCGGCCATTGAGCTGGAGCGCCTGGTGCGCGCCTTCAATCCTTGGCCAATCTGCCACAGCACCTTGAACGGTGAAGCCCTGAAAGTGCTGGCGGCCAGT TACGCCGAAGGGCAGGGCGCCCCCGGTGAAATCCTCGGCGCCAGCAAGGACGGCCTCGTCGTCGCCTGCGGTGAGCAAGCGCTGTGCCTGACCCGTTTGC AATTGCCCGGCGGCAAGGCCCTGAACTTCAGCGACTTGTTCAACAGCCGCCGTGAGAAATTTGCCGTCGGCACCCTCTTGGGCCAAGCGGTGGATGCCTC
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| DNA Sequence for Gene |
>CD58_RS00380
ATGAACCCGCGTCTGGCCGCCGCCAAGGCACTTGCCGCTGTCCTCAGTGGCAAAGCCTCGCTCAACAGTTCCCTGCCGACCCAACTGGACAAGGTTGAAG ACCGTGATCGCGGCTTCACCCAAGACCTGGCGTTCGGCACCGCCCGCTGGCAGCCGCGGCTGTCGGCCCTGGCGGCCAAGTTGCTGCAGAAACCGTTCAA GGCCGCCGACGCTGACGTCGAAGCGCTGCTGCTGGTGGGGCTTTATCAATTGCTCTACACCCGCGTTCCCGCCCACGCTGCCATCGGCGAAACCGTGGGT TGCGCCGACAAGCTGAAAAAGCCCTGGGCCAAGGCCCTGATCAATGCCGTGTTGCGCCGCGCCCAACGGGAAAGCGAAGCCCTGCTGGCCGAGCTGGAAC ACGACCCGGTGGTGCGCACCGCCCACCCGCGCTGGTTGCAGAAATCCCTGAAGGCCTTCTGGCCCGAGCAATGGGAAGCCATTTGCGCGGCCAACAACGC CCATCCGCCGATGATCCTGCGGGTCAACCGTCGTCACCATACCCGCGATGCCTACCTGGCCTTACTGGGCGAGGCGGGCATCCCGGCCATCCCGTGCCAG TACAGCCGCGACGGCATCGTGCTGGAAACCCCGGGCGATGTGCGCGCCCTGCCGGGCTTCGCCGAAGGCTGGATCAGCGTCCAGGACGAAGCCGCGCAAC TGGCCGCCGACCTGCTGGAGCTGGCCCCCGGCCAACGGGTGCTGGACGCCTGCTGCGCGCCGGGCGGCAAAACCTGCCACATCCTTGAGGCCGAGCCGAA GCTGGCCGGCGTAGTGGCGGTGGATCTGGAAGCCAAGCGCCTGGTGCGGGTCAAGGAAAACCTCGAACGTCTGGGCCTGGACGCCGAGCTGATCGCCGCC GACGGCCGCGACACCGCGACCTGGTGGGACGGCAAACCGTTCCAGCGCATCCTGCTGGACGCGCCGTGTTCGGCCACCGGGGTGATCCGTCGCCACCCGG ACATAAAACTCACCCGCCAGCCGGACGACATCGCCGCACTGGCCACATTGCAAGGCGAACTGCTCGATGCGCTGTGGCCGATCCTGGAAGTCGGCGGCAT GTTGCTCTACGCCACCTGCTCGACCTTGCCGACCGAGAACACCGAAGTGATCGAGGCCTTCCTCGCCCGCACCCCGGGCGCCCGGGAACTGGACATCGCC AGCCAGGCCGGTCTCAAGCAGCCCCATGGCCGCCAGTTGCTGGCCCAGGAAGGCGGACATGACGGGTTCTACTACGCCAAACTGATCAAGATCGCCGCCG CACGCGGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACCGATTCGATAGGAGTGACTGGATGAAAATCATCATCCTCGGCGCAGGGCAGGTCGGCGGTTCGCTGGCGGAACATCTGGCCAGTGAGGCCAACGACA TCACCGTGGTCGACACCGACGGCGAACGCCTGCGGGGCTTGGGCGACCGCCTCGACATCCGCACCGTACAAGGCCGGGGTTCCTTGCCTACGGTGCTGCG CCAGGCCGGTGCCGACGATGCCGACATGCTGGTGGCCGTGACCAACAGCGATGAAACCAACATGGTCGCCTGCCAGGTCGCTCACACCTTGTTCCACACC CCGACCAAAATCGCCCGGGTGCGCGAAGCGGCCTACCTGACCCGCGCCGACCTGTTCGACAACGAAGCGATTCCGGTGGACGTGCTGATCAGCCCCGAGC AGGTGGTGACCAACTACATCAAGCGCCTGATCGAGCACCCCGGTGCCCTGCAGGTGATCGACTTCGCCGAAGGCAAGGCGCAACTGGTGGCGGTCAAGGC
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| Amino Acid Sequence |
>16S rRNA methyltransferase
MNPRLAAAKALAAVLSGKASLNSSLPTQLDKVEDRDRGFTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVEALLLVGLYQLLYTRVPAHAAIGETVG CADKLKKPWAKALINAVLRRAQRESEALLAELEHDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHHTRDAYLALLGEAGIPAIPCQ YSRDGIVLETPGDVRALPGFAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAKRLVRVKENLERLGLDAELIAA DGRDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIAALATLQGELLDALWPILEVGGMLLYATCSTLPTENTEVIEAFLARTPGARELDIA SQAGLKQPHGRQLLAQEGGHDGFYYAKLIKIAAARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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