Pseudomonas balearica DSM6083 (=SP1402), CL52_RS09410 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas balearica DSM 6083, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGTGACAGATGTAAACGCCAACTTTGTCACAGCATTCGCCCGGATCGCCGAGTGGCCGTATTCCGGCGCTTCACGCGGCGACCATTGGTCAGTTGGCC TTCGAGCGCAACGCGGATCCGCTGTCACAACCGATACCAGTCAAAGATGACAGCCGCGTAACGGTCGTGCTGAGGAGGTTGCATGAATCGCGTCGTTCTG ACGTTTGCGCTCACCGCACTGGTGGCGCTTTCCGCCGCGGCCCAATGGCCGGCCGGCACGCCGCGCGATGACCAGGGCTCGCGCCCGAGCCCGATGGGCA ATCCGACGCCGCAGCAGGAGGTGGAAACCCATCGCGACGACCAGGGGCGAGTCGTCACCGAGGACGGCAAGCCGGTGCGCAGCGGCGCCGGCGCGGACGC CGAGGCCTCGGAGCGCTCGACACGCCATGACGACCAGGGCGGCCCGCATGACGAGTCGACCTCGTCCGGTTCCGTCGAATGATCGTCGCCGAGGTGCAAG
|
|
| DNA Sequence for Gene |
>CL52_RS09410
|ligD
ATGCCACTGGAAGAATACAACCGCAGGCGTGACTTCGCCGCGACCCCCGAGCCCAGCGGAACGCCGCGTCGCACCGGGCGTGCCAAGGCGCGGGCGCTGC AGTTCTGCGTGCAGAAGCATGACGCGACGCGCCTGCACTACGACTTCCGCCTGGAACTCGATGGGACGCTAAAGAGCTGGGCGATTCCCAAGGGGCCGAG CCTGGACCCCAAGGTCCGGCGGCTGGCGGTGCACGTCGAAGACCATCCGCTGGATTACGCCACCTTCGAGGGGCGCATCCCGGACGGGCACTATGGCGCC GGGGAGGTGATCGTCTGGGATCGCGGTATCTGGATTCCACAGGGCGACGCCGCCGAGGCCTATCGCAAGGGCAAGCTCAAGTTTGAACTGCAGGGCGAAA AGCTCGCCGGCGTGTGGAATCTGGTGCGCACGCACATGCAGGGCGACAAGGAGCAGTGGTTCCTGATCAAGTCCAACGACGAGCAGGCAAGGCCGCAAAG CGAGTACGACATCGTCGCCGAGCAGCCTGACAGCGTGCTCAGCGAGCGCACGCTGATTCCCCGTCGCCGCGGTGCGGCCAAGCCTGCGGCGGCGCCCCCC AGCAAGGGGACAGGCCGGCGCAAGAGCAAGGCGGCCGCGCCAGCGCTGCCGGAGGGCGCCGTGCCCGCCGAACTGCCGGCGAGTTTCAAGCCGCAGCTGG CGACGCTCGTCGAATCCGTGCCCGAGGGCGACTGGCGCTACGAGATCAAGTTCGACGGCTACCGCCTCTTGGCGCGTATCGAGGGCGAGCGGGTGCAGCT GTTCACCCGTAATGGCCACGACTGGACGGCGAAGATGCCGCGGCAGGCCGAAGCGCTGGCCGGGCTCGGGCTGGATTCGGCCTGGCTGGACGGCGAGGTG GTGGTGCTGGGCGAGGAGGGCGCACCCGACTTCCAGGCGCTGCAGAACGCGTTCGAGGCCGGGCGCAGCGGCAGCATCCTCTACTACCTGTTCGATGCGC CCTATCTGGACGGCCACGACCTGCGCCAGGTGCCGGTCGAAGAGCGCCGAGCGCTGCTGGCCCGGTTGCTCGAGCGCAGCGACAGCGAGCTGCTGCGGTT TTCCGCCGACTTCAGCGAGCAACCCGAGAGCATTCTCGAGAGCGCCTGCCAAATGCGTCTGGAAGGGTTGATCGGCAAGCGTGCGGGGAGCAGCTACGTG TCCCGCCGCAGCAACAGCTGGGTGAAGATCAAGTGCAAGAATCGGCAGGAATTCATCATCGTCGGTTATACCGAACCCAAGGGCGCGCGCAGCGGTTTCG GGGCGCTGCTGCTGGGTCTGCATGACGATGACGGCAAGCTGCAGTACGCCGGCAAGGTCGGCACCGGCTTCAATCAGGCGACGCTGAAAAGCCTGCACGC CAAGATGCGGCCGCTGGAAACCGAACGCTCGCCGCTGGCCAAGGCGCCGCCGGCCGCGGATGTGCGCGGGGCGCACTGGCTCGAACCGCAGCTGATGTGC GAAGTGGCCTACGCCGAGATGACGCGCCAGGGCGTGGTGCGGCATTCGGTGTTCCATGGGCTGCGCTCGGACAAGCCGGCCAAGGCGATCACCCGTGAGG TCGCCCGCACGGCGCCCGCGCGGCAGGGCACCAGCGATGCGCTGGCAGCCACGCGCGTGCGCATCAGCAACCCGGAGCGGGTCATCGACCCGGCGATCGG CGCGACCAAGCTCGAACTCGCGCGCTTCTACGCCGAAGTGGCGCCCTGGGCCCTGCCGCACCTGCAACGGCGGCCGCTGGCACTGGTGCGCGCGCCGGAA GGCATCGACGGCGAGCTGTTCTTCCAGAAGCACGCCGACAAGCTGAGCATTCCGCACATCACCCAGCTCGATCCATCGCTGTACCCCGAGCATGCGCCGC TGCTGGTGATCGAGAGTGCCAAGGCGCTGGTCGGCGCCGCGCAGATGGGCACGGTCGAATTGCATACCTGGAATGCCAAGGCGCCGGCGCTGGACCACCC GGACCGCTTCGTCCTCGACCTCGACCCGGACCCGGCGCTGCCGTGGAAGCGCATGCTCGAAGCGACCCAGCTGACCCAGACGCTGCTCGACGAGATTGGC CTGGAGTCCTATCTAAAGACCAGTGGCGGCAAGGGCATGCACATTCTGGTGCCCTTGCGCCCGGTGCATGGCTGGGCGGAGGTCAAGGCCTTCAGCCAGG CCGTGGCGCGCTACCTGGCCAAGCTGCTGCCGCAGCATTTCTCTGCCGTCAGCGGACCGAAGAACCGGATCGGCAAGATCTTCATCGACTACCTGCGCAA CAGCCAGGGTGCGAGCACGGTCGCAGCATTTTCCGTTCGCGCGCGTGAAGGCTTGCCGGTGTCGGTGCCCATCGCGCGCGAGGAACTGCCGGAACTGCGC GGGGCCAACGCCTGGACGGTGCGCAATCTACTGCCGCGGCTGGAAGAACTGGGGCGCGAAGACCCCTGGGAAGGGTTCTGGAACAGCGAGCAGCAGATCA GCGCCGAGATGCGCGAGCGACTCGGCATGAAGGATTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCGCCATCCGTCCGGATGGGGGGCTGCCTGCACCGCGAGGGCGATACACAAGCCGGCCAAGCGCAGCGAACAATCGGCCGGATCACGGAGCTGTTTCGG CGAGCGGAGCGCCAGGCCAAGGCCAGCATGACGTCGGCCCAAAAAGAGAATCAAAGGAGTGCTCTGCATGTTTCCACGCAAACCGCTGTATATCTGCCTT CTTCTTGGCGCCTTGCCAAGCCTGGCGCTGGCTCAGGTCGCGGTGGACCAGACCGGCACCGACAACGAAATCATTCTCGAGCAGGGAGGCGGCACGGGTA ATTCGGCGAGCCAGACCCAGGACGGCGTACTGAACCGTTCACGGGTGGTGCAGACCGGCAACGGCAACGAGGCGACGACCAACCAGTTCGGTGTCGAGAA CCAGGCGCAGATCATCCAGACCGGCGACCTGAACCAGGCCAGCATCTACCAGGCCAACCTGGATTACGTGCACAGCGCCGCGGTCGAGCAGGTGGGTAGC
|
|
| Amino Acid Sequence |
>ATP-dependent DNA ligase
MPLEEYNRRRDFAATPEPSGTPRRTGRAKARALQFCVQKHDATRLHYDFRLELDGTLKSWAIPKGPSLDPKVRRLAVHVEDHPLDYATFEGRIPDGHYGA GEVIVWDRGIWIPQGDAAEAYRKGKLKFELQGEKLAGVWNLVRTHMQGDKEQWFLIKSNDEQARPQSEYDIVAEQPDSVLSERTLIPRRRGAAKPAAAPP SKGTGRRKSKAAAPALPEGAVPAELPASFKPQLATLVESVPEGDWRYEIKFDGYRLLARIEGERVQLFTRNGHDWTAKMPRQAEALAGLGLDSAWLDGEV VVLGEEGAPDFQALQNAFEAGRSGSILYYLFDAPYLDGHDLRQVPVEERRALLARLLERSDSELLRFSADFSEQPESILESACQMRLEGLIGKRAGSSYV SRRSNSWVKIKCKNRQEFIIVGYTEPKGARSGFGALLLGLHDDDGKLQYAGKVGTGFNQATLKSLHAKMRPLETERSPLAKAPPAADVRGAHWLEPQLMC EVAYAEMTRQGVVRHSVFHGLRSDKPAKAITREVARTAPARQGTSDALAATRVRISNPERVIDPAIGATKLELARFYAEVAPWALPHLQRRPLALVRAPE GIDGELFFQKHADKLSIPHITQLDPSLYPEHAPLLVIESAKALVGAAQMGTVELHTWNAKAPALDHPDRFVLDLDPDPALPWKRMLEATQLTQTLLDEIG LESYLKTSGGKGMHILVPLRPVHGWAEVKAFSQAVARYLAKLLPQHFSAVSGPKNRIGKIFIDYLRNSQGASTVAAFSVRAREGLPVSVPIAREELPELR GANAWTVRNLLPRLEELGREDPWEGFWNSEQQISAEMRERLGMKD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|