Pseudomonas balearica DSM6083 (=SP1402), CL52_RS00945
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas balearica DSM 6083, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGAAGCCCATCCCGCCCAAAGAGACGCTAGGTATTGCTACCACCGACTTCACCGAACCTTCGGCGGCAGCGGAGAAACACGAGAACTACCGGCTCAGCAG TTTCTCGATGTCCCTCGATGCCATGCAGACCCCTCTCGAAGTCCGATGGTTGTTTGACGACGATAGCGAGCAACAGACGGTCTGGAATGCCAGCGAAATC GAGGACGCAGTTCTGCCGATACGCGCTGGTCGCGCGCTGATGATGCTCGGCATACGCGCCGCCGGTGCCGACGACCACTTCGTATGGGCAGACGTATTGC CCGACGAACGCCACTTCACGGTTATACGAACCCTCCTTCAGGAAGGCGAGCCGAGGGCCTTCTTCCACAAGATGAGGCTGGCGCCACGCGGCAACTGCCT GCTCGTGGCCATGGGATCCAGCACGGGATGCTACCGCCGACGCTAGGAGAGCCCCGCTTAAGCGCGTCGGATACGTAACGACAAGGATGAACCGTTAGCA
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| DNA Sequence for Gene |
>CL52_RS00945
ATGTCCTTCAACCATCACTACCAAAGCGAACTCACCGCCCTGCGCCAGCTGGGCAAGCGCTTTTCCGAGCGCAGCCCGGCGCTGGCGCCGTTCCTCGGGC AGGCTGGACGCGATCCGGATGTCGAGCGCCTGCTCGAAGGCTTCGCCTTCCTCACCGGGCGGTTGCGGCAGAAACTCGACGACGAGCTGCCGGAGCTGAC CCACTCGCTGATGCACCTGCTGTGGCCGAATTACATGCGGCCGCTGCCGGCGTTCAGCATGCTGCAGTTCGATCCAGTCAAGCGCAGTGGCAAGGCGCTC AGCGTGCCGCGTCACACGCCAGTCGAGGCCAAGCCGGTACGCGGAGTGACCTGCCGTTTCCGCACGGCCTATGCCACCGAGGTGCTGCCGCTGGAACTGA CCGAGCTGAACTACTCGGTCAAGGGCGACGGCGCCTTGCTGAGCCTGCGTCTGGGCATGACCGCCGATGGCCACCTGGGCGAGGTCGACGTGCGCCGGCT GCGGCTGCACCTGGCCGGCGAGCGTTACGTCAGCCAGATGCTCTACCTCAGCCTGCTGCGCCATCTCGATGGTATTCAGCTGATCGCATTGGATGCCCAG GGCAAGCCATTCACCGACGCCCAGGGCCTGCCGTTGCCGCCCCTGACGCTGGAGGCCGGCAAGGTGGAGCCGGTCGGTTTCGCCGAGGACGAGGCGCTGA TCCCCTACCCACTCAACACCTTTCGCGGCTACCGGCATCTGCAGGAATACTTCGCCTTCCAGGAGAAATTTCTCTTTGTCGACCTCGGCGGCCTCGACGC GCTGCAACGCCTGCCAAAGGAGCGCCTGGAGCAGGCGCGCGGCTTCGAGCTGCGCTTCGACATCCGCAAGGCCGGCGCGCAGCGCATCCGGCCGACGCGC GACAACGTGCGGCTGTACTGCACGCCGGTGGTCAACCTGTTCGAGCACGATGCCATCCCGGTGCGCCTGGACGGCAAGCAGGACCAGTACCTGGTGCGCC CCGCCGAGCTGGACAGCAGCGGCTGCGGCATCTTCTCGGTCAACCGGGTCACTGGCTGGAAGCCGGGCGGCAAGGGCTACGAGGAGTACGTGCCGTTCGA ATCCTTCGAGCACGACCCCAGCTTTGACGTACCCCTGGCGCGCCCGCACTACAGCGTCCGCCAGCAACCGTCGCTGCTCGGCGATGGCCTGGAAACCTAC CTGGCGTTCGGCCTGCGTGATCTGGACGGCCACGAAACGCTGTCGATCGAGCTGACCTGCACCAACCAGAACCTGCCGCGCGAGCTGCGCCTGGGCGACA TCTGCCTGCCCAGCGAGGACACGCCCGAATTCCTCACCTTTCGCAACATCAGCCCGGTCACGCCGAGCTATGCGCCGCCGCTGCACCGCGACTTCCTGTG GAAGCTGATCAGCAACATGTCGCTCAACTACCTGTCGCTGGCCAACGTCGAGGCGCTCAAGGTGATCCTCGAGACCTACGACCTGCCGCGCTACTACGAC CAGCACGCCGAGAAGGTCAGCAAGCGCCTGCTCGGCGGGCTGAAAGCCATCGCCCATCAGCATGTAGACCGCCTGCACCGCGGCCTGCCGGTGCGCGGCG TGCGGACCGAACTGACCATGGACCCGGACGGTTACCTGGGCGAAGGCGACCTGTTCCTGTTCGCCTCGGTGCTCAACGAATTCTTCGCACTCTACGCCAG CCTCAACTCGTACCACGAGCTGCGCGTGAGCAGTACACAGGGAGAGGTGTACCAATGGACGCCGCGCATGGGGCAGCAGCCCCTACTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGCAACAACTACTTTGAGCGCAACAGCCCCTGCTCTGAGCAGCGGGCCGCACGGCGCCGGGCTCGGCCGGCTGAGCCAGGGCATTCGCGAGTACAGCCT GTTCCAGGGCGTGTTGCTGGCGCTGGATCGCCTGCGCGCGGTGCATCCGGAGCTCGACGAGCAGGCCCTATATGAGCGCCTGGACTTCCAGGCCAACCCG AGCCTTGGTTTTCCCGGCACCGATATCGACGCCGTCGAGTTCTACGAGGACGACCGCGGCTGGCGCGCCCGGCTGCGGCTGAACCTCGTCAGCCTGTTCG GCGCCGGCTCGCCGCTGCCAGCCTTCTATGCCGACCAGGCGCTGGGCGACAGCATCGACGGCAACCCGACGCGCGAATTTCTCGACCTGTTCAACGACCG CCTGCAGCGCCTGCTGCTGCCGATCTGGCAGAAGTACCGCTACTACGCGCGCTTCACCACGGGCGCGCGCGACCCGCTGTCCGAACAGCTGTTCGCCCTC
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| Amino Acid Sequence |
>type VI secretion protein
MSFNHHYQSELTALRQLGKRFSERSPALAPFLGQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMHLLWPNYMRPLPAFSMLQFDPVKRSGKAL SVPRHTPVEAKPVRGVTCRFRTAYATEVLPLELTELNYSVKGDGALLSLRLGMTADGHLGEVDVRRLRLHLAGERYVSQMLYLSLLRHLDGIQLIALDAQ GKPFTDAQGLPLPPLTLEAGKVEPVGFAEDEALIPYPLNTFRGYRHLQEYFAFQEKFLFVDLGGLDALQRLPKERLEQARGFELRFDIRKAGAQRIRPTR DNVRLYCTPVVNLFEHDAIPVRLDGKQDQYLVRPAELDSSGCGIFSVNRVTGWKPGGKGYEEYVPFESFEHDPSFDVPLARPHYSVRQQPSLLGDGLETY LAFGLRDLDGHETLSIELTCTNQNLPRELRLGDICLPSEDTPEFLTFRNISPVTPSYAPPLHRDFLWKLISNMSLNYLSLANVEALKVILETYDLPRYYD QHAEKVSKRLLGGLKAIAHQHVDRLHRGLPVRGVRTELTMDPDGYLGEGDLFLFASVLNEFFALYASLNSYHELRVSSTQGEVYQWTPRMGQQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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