Pseudomonas balearica DSM6083 (=SP1402), CL52_RS00940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas balearica DSM 6083, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAATTCCTCACCTTTCGCAACATCAGCCCGGTCACGCCGAGCTATGCGCCGCCGCTGCACCGCGACTTCCTGTGGAAGCTGATCAGCAACATGTCGCTCA ACTACCTGTCGCTGGCCAACGTCGAGGCGCTCAAGGTGATCCTCGAGACCTACGACCTGCCGCGCTACTACGACCAGCACGCCGAGAAGGTCAGCAAGCG CCTGCTCGGCGGGCTGAAAGCCATCGCCCATCAGCATGTAGACCGCCTGCACCGCGGCCTGCCGGTGCGCGGCGTGCGGACCGAACTGACCATGGACCCG GACGGTTACCTGGGCGAAGGCGACCTGTTCCTGTTCGCCTCGGTGCTCAACGAATTCTTCGCACTCTACGCCAGCCTCAACTCGTACCACGAGCTGCGCG TGAGCAGTACACAGGGAGAGGTGTACCAATGGACGCCGCGCATGGGGCAGCAGCCCCTACTTTGAGTGCAACAACTACTTTGAGCGCAACAGCCCCTGCT
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| DNA Sequence for Gene |
>CL52_RS00940
CTGAGCAGCGGGCCGCACGGCGCCGGGCTCGGCCGGCTGAGCCAGGGCATTCGCGAGTACAGCCTGTTCCAGGGCGTGTTGCTGGCGCTGGATCGCCTGC GCGCGGTGCATCCGGAGCTCGACGAGCAGGCCCTATATGAGCGCCTGGACTTCCAGGCCAACCCGAGCCTTGGTTTTCCCGGCACCGATATCGACGCCGT CGAGTTCTACGAGGACGACCGCGGCTGGCGCGCCCGGCTGCGGCTGAACCTCGTCAGCCTGTTCGGCGCCGGCTCGCCGCTGCCAGCCTTCTATGCCGAC CAGGCGCTGGGCGACAGCATCGACGGCAACCCGACGCGCGAATTTCTCGACCTGTTCAACGACCGCCTGCAGCGCCTGCTGCTGCCGATCTGGCAGAAGT ACCGCTACTACGCGCGCTTCACCACGGGCGCGCGCGACCCGCTGTCCGAACAGCTGTTCGCCCTCATCGGGCTCGGCGGCGAGCAGATCCGCGCGGCGAG CGAGCTGAACTGGAAGCGCCTGTTGCCCTACCTCGGCCTGCTCAGCCTGCGCGCGCATTCGGCGGCGCTGATCGAGTCGGTGCTGCGCTACTACTTCAAG CATGCCGACCTGCGCATCGAGCAATGCCTGGAGCGCCAGGTCGACATCCTCGGCGAGCAGCAGAACCGCCTCGGCCGCGCCAACAGTCAGCTCGGCGAAA ACCTCGTGCTGGGCGAACGGGTACGCGACCGCGGCGGCAAGTTCCGCATCCACATCCGCCAGCTCAGCTGGGACCGCTTTCACGAATTCCTGCCGGTCGG CACGGGCTACCAGCCGCTCTGCGCGCTGGTGCGCTTCACCCTGCGCGACCCGCTGGACTACGACATCCGCCTGGCCTTGCGCCAGGACGACATCCGCGAG CTGCGCATCGGGGAAGGAAACCCCTGCCGCCTCGGCTGGACCAGCTGGCTCGGCACCGAACGGGCCGACGGCATGGTCACCCTCGGCAGCAAGCTTCATT AA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAACCGACATGATCAACGTAGACCTGCAACAACTCGTCCAGGCGCTCGACGCGCCGACCAAGCGCGACCTGGAAGGCGCCGCCGAACGCTGCGTGGTAC GCGGCGGCAGCAAGATCCTGGTCGAAGACCTGCTGCTCGGTTTGCTCGAGCGCGCCGACGGCCTGCTGTTACGCGCCCTGCAGGACGCCGGGGTGGACGC TGGCGAGCTGGCCCAGGCCCTGCAGGCCCGCGGCGAGCACAGCGAATCGCGCAACCCGGTATTTTCCGCCGAGCTGGTGCAGTGGCTGCAGGACGCCCTG CTGGTCGGCAACCTCGAACTCGGCCAGAGCCAGATCGATCAGGCCGCGCTGTTGCTCGCGCTGCTGCGCAACCCGATGCGCTATGCCGGCAGCCGCTACC AGCCGCTGCTGGCGCGGCTGAATATCGAGCGCGTGCGTGACTTTGCGCTGGCGCAGCAACCCCAGACGGCGCCCGGAAAACCGGCCGCGAGCGGCGAATC
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| Amino Acid Sequence |
>type VI secretion protein
MSSGPHGAGLGRLSQGIREYSLFQGVLLALDRLRAVHPELDEQALYERLDFQANPSLGFPGTDIDAVEFYEDDRGWRARLRLNLVSLFGAGSPLPAFYAD QALGDSIDGNPTREFLDLFNDRLQRLLLPIWQKYRYYARFTTGARDPLSEQLFALIGLGGEQIRAASELNWKRLLPYLGLLSLRAHSAALIESVLRYYFK HADLRIEQCLERQVDILGEQQNRLGRANSQLGENLVLGERVRDRGGKFRIHIRQLSWDRFHEFLPVGTGYQPLCALVRFTLRDPLDYDIRLALRQDDIRE LRIGEGNPCRLGWTSWLGTERADGMVTLGSKLH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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