Pseudomonas amygdali pv. tabaci ATCC 11528, AAY86_RS20570
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas amygdali pv. tabaci str. ATCC 11528 scaffold9.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTCGCCGTTGGCCTGCAGGGTGCTGAGCAGGCCGTCCTGTGAAAACTGCTTCATCTTCAAGGCGTATTCGATGACTTCGCCGTCGCCGCCCAATTGCGG CGCGTCGACGGTGCCGGTGATCGGCAGCACTTCGATGTAGAGGTCGTCGGTCAGGCGCTGATTGAGGCGCAGCTCTTCTTCGCAGAAATGCTTACGCAGA GCCAGCGTAGTAAAATCCAGGAAACCGAAGTTCATCGGCTTCTTGAATTTGTAGGCATACGGGCCAGTCAGCAGAACCCACGAAATGTGCGTTTCGATGA GCTGGAAATTCTCCACCGGATGTGGGAAAAGAGCAGGGTTCTGCAGGGCAGCGATCAAAGACTTGCTCACGGGCGATCCTTCAGGAATGTGTTCAAAATG TAAGTACGCGATGCCGCCATTATGGCCGCTTGGCGCGAGGCTGCAAACCGCTGACTCGGGCGTCTGTCGATCCTTGCTAAAGTGCGTATAATCCGCGCCC
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| DNA Sequence for Gene |
>AAY86_RS20570
ATGACTCGATCCCGCACCTCTCGTTCTCCTAAAAAGCAACCTCCTCGCAGCCTGAACAAGTGGCTGGGCTGGGCGTTGAAGCTCGGTATTGTCGGCCTGG TTCTGCTGGGCGGCCTGGCCATTTACCTCGATGCAATCGTTCAGGAGAAGTTCTCCGGCAAGCGCTGGACCATTCCGGCCAAGGTCTATGCACGACCGCT GGAGCTGTTCGTCGGACAGAAGCTGAGCCGCGATGATTTTCTCATCGAACTCGACGCCTTGGGTTATCGCCGCGAAAGCGTCGCGAATGGTCCTGGCGCT GCGGCGGTGAATGGCAATACCGTCGACCTCAACACGCGGGGTTTCCAGTTCTACGAAGGCACTGATGCGGCGCAGCAGGTGCGCGTGCGCTTTTCCGGTG ATTACGTCGCCGACCTGTCGTCGGGCAATGGTGCCAAGCTTGCCGTGGCGCGGCTTGAGCCCTTGCTGATCGGCGGGCTTTACCCGAAGAACCTCGAAGA CCGGATCCTGATCAAGCTTGATCAGGCACCGCCGTATCTGCTCGACGGGCTGGTGGCGGTCGAGGACCGCGATTTCTATCACCACTTCGGCGTGTCGCCC AAGTCCATTGCCCGGGCTATCTGGGTGAATACTTCGCAAGGGCAGATGCGCCAGGGCGGCAGTACGCTGACCCAGCAGTTGGTCAAGAACTTCTACCTGA CCAACGAGCGCAGCCTGACCCGCAAGCTCACCGAGGCCATGATGGCGGTCTTGCTGGAGATCCATTACAGCAAGCAGGAAATCCTCGAGGCTTACCTCAA TGAAGTGTTTGTCGGTCAGGACGGTCAGCGTGCAGTGCACGGTTTTGGTCTGGCCAGTCAGTATTTCTTCAGCCAGCCGCTTTCCGAACTGAAGATTCAT CAGGTGGCGATGCTGGTCGGGCTGGTCAAGGGGCCGTCCTTCTACAACCCGCGCCGCAATCCCGAGCGTGCTCTGGAGCGTCGTAATCTGGTGCTCGACC TGTTTGAGCAGCAAGGTGTGGCAACCCCCGAAGTGGTGGCCGCCGCGAAGAAATTGCCACTGGGTGTGACCAAGACCGGCACGCTCGCCGACAGCTCGTT CCCGGCTTTTCTGGATCTGGTCAAGCGCCAGTTACGCGAAGACTATCGCGATGAAGACTTGACCGAAGAAGGGCTGCGGATCTTTACCAGCTTTGATCCG ATCCTGCAGATGAAGTCCCAGGCCGCTATGGACGACACGTTCAAAAAGCTCGCCGGGCGCAAGGGTGTTGATGAAGTAGAGGCGGGTATGGTCGTCACCA ACCCGGAGACCGGTGAAGTACAGGCGCTGATTGGCGGTCGCGAAGCCGGGTTCTCGGGTTTCAACCGGGCGATCGATGCAGTGCGTCCGATAGGCTCGCT GGTCAAGCCGGCTATTTACCTGACCGCACTGGAACGTCCGAGCCAGTACACGCTGACCAGCTGGATTGCCGACGAACTGTTTCAGGTCAAGGGCGCTGAT GGCCAGATCTGGAAACCGCAGAACTACGATCACAAGTCGCATGGCAACATCTTTCTGTATCAAGGGCTGGCGCATTCCTACAACCTGTCGACTGCCAAGC TGGGCCTTGAGCTGGGTATTCCAACTGTCTTCAAGACACTGGCCAAGCTGGGTGTAACGCGTGAGTGGCCTGCTTATCCGTCGATGCTGCTGGGTGCGGG CGGCTTGAGTCCGATGGAAGTCGCCACCATGTACCAGACCATCGCCAGCGGCGGGTTCAATACGCCGATGCGTGGTATTCGCAGTGTGCTGACCGCCGAA GGTGAACCGCTCAAGCGTTATCCGTTCAAGATCGAGCAGCGTTTCGATCCGGGTGCCATTTACCTGGTACAGAATGCGATGCAGCGGGTCATGCGCGAAG GGACGGGCAAATCTGTTTACAACGTGTTGCCGAGCTCGCTGAATCTGGCGGGCAAGACCGGCACCAGTAATGACTCGCGCGACAGCTGGTTCGCCGGTTT CAGTCAGGATCTGCTGGCCGTAGTGTGGATGGGCCGTGATGATAACGGCAAGACACCGTTTACTGGCGCCACTGGTGCCTTGCAGGTCTGGACCAGCTTT ATGCGCAAGGCCAATCCGCTGCCGCTGGACATGGCGATGCCGGATAACGTCGTTCAGGCGTGGGTCGATGCGCAGACAGGCCAGGGTTCTGATTCGAGCT GCCCGAATGCAGTGCAGATGCCGTATATTCGCGGCAGTGAGCCCCAGCCCGGCGCGACATGCGGCGGCGCTCCGGCACCTGCCACTGAGGTGATGGACTG GGTCAAGGGTTGGTTGAACTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAATCGAGGTTTTGAAGTGAATAAATGGTGGATTCCAGCTTTAACGGCACTGGCCTTGCTGAACGGCTGCGCCAGTGTGGAACGCGGCTCGATTCCGGT CGTGGATTCGAGCTCCAAGGTGTCCAACGGCGAGCGCGCGGCAGCGTCGCGTAATGGCACTTACCGAACCAACACCGCCCCGGTTCAGCAGCCGCAAGCC GTGCCGCAGGATTCGGGTGTGGTGGTGATGGTGCCGGGCGCGGGTGGTGCCGATGCAGGGCAGAGCTTCTCTGCGCCGACCAGTCAGGCGCCGTTCAGTG TCAACACGCCGCCTGTCGACGCGGCTCCGGTCAATCAGGCCCCGATCAGCCCGGCTCCGGCGAACAACAGTTACAGCATGCCGGCGGCCTCTGCATTGAC CGGGATTCCGTCCAGTGGCGGCGGTCTGTCAGAGGACGAGCAGCTTGACGGGCCTGTACTGGCGTTGCTGACCACGGCGCAGCAACAGCAGAGCAGTGGC
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| Amino Acid Sequence |
>penicillin-binding protein 1B
MTRSRTSRSPKKQPPRSLNKWLGWALKLGIVGLVLLGGLAIYLDAIVQEKFSGKRWTIPAKVYARPLELFVGQKLSRDDFLIELDALGYRRESVANGPGA AAVNGNTVDLNTRGFQFYEGTDAAQQVRVRFSGDYVADLSSGNGAKLAVARLEPLLIGGLYPKNLEDRILIKLDQAPPYLLDGLVAVEDRDFYHHFGVSP KSIARAIWVNTSQGQMRQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMAVLLEIHYSKQEILEAYLNEVFVGQDGQRAVHGFGLASQYFFSQPLSELKIH QVAMLVGLVKGPSFYNPRRNPERALERRNLVLDLFEQQGVATPEVVAAAKKLPLGVTKTGTLADSSFPAFLDLVKRQLREDYRDEDLTEEGLRIFTSFDP ILQMKSQAAMDDTFKKLAGRKGVDEVEAGMVVTNPETGEVQALIGGREAGFSGFNRAIDAVRPIGSLVKPAIYLTALERPSQYTLTSWIADELFQVKGAD GQIWKPQNYDHKSHGNIFLYQGLAHSYNLSTAKLGLELGIPTVFKTLAKLGVTREWPAYPSMLLGAGGLSPMEVATMYQTIASGGFNTPMRGIRSVLTAE GEPLKRYPFKIEQRFDPGAIYLVQNAMQRVMREGTGKSVYNVLPSSLNLAGKTGTSNDSRDSWFAGFSQDLLAVVWMGRDDNGKTPFTGATGALQVWTSF MRKANPLPLDMAMPDNVVQAWVDAQTGQGSDSSCPNAVQMPYIRGSEPQPGATCGGAPAPATEVMDWVKGWLN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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