Pseudomonas amygdali pv. tabaci ATCC 11528, AAY86_RS17840
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas amygdali pv. tabaci str. ATCC 11528 scaffold7.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCACGCCTGGACCGACTGGACTCGGCGCGTATCGGCAGTTCTCGGGCCATCACCCAACTGATTTTGCACTTGGTGGAAGGTACGCCGATTCGGCTGGTGG ACGGCGGGGCCCAGAAGCGCTGTTTCACCGATGTCGCCGACGGTATCGAGGCGCTGGCGCGGATTATCGAAAATCGTGATGGGCGCTGTAATGGTCAGAT CATCAACATCGGTAACCCCGACAATGAAGCCAGCATTCGCCAATTGGGTGAAGAGCTGCTGCGCCAGTTCGAAGCGCACCCGTTGCGCGGCAACTTCCCG CCATTCGCAGGCTTTCGCGAAGTAGAAAGCCAGTCCTTTTATGGCAAGGGTTATCAGGATGTCAGCCATCGCAAACCGAGTATCGACAACGCCCGACAGT TGATTGGCTGGACACCAGGTATCGAGCTGAGCGAAACGATTGGCAAAACCCTGGACTTCTTCCTTCGCGAAGCCATGGCTGAAAAGGCGGATATGCGCTG
|
|
| DNA Sequence for Gene |
>AAY86_RS17840
ATGCAGGCAGGCTTAAGAATCGATGTCGACACATATAGGGGCACCCGTGAAGGCGTGCCGAGGTTGCTGGACATACTCGATGAAGCTCAGGTCAAGGCGA CGTTCTTTTTCAGCGTCGGCCCCGACAACATGGGACGTCACCTGTGGCGTCTCGCACGGCCCACGTTTTTCTGGAAGATGCTTCGCTCCAGAGCAGCAAG CCTGTATGGCTGGGATATTCTGCTGGCGGGTACGGCGTGGCCGGGCAAGCCGATAGGACGTGACCTTGGCCCGTTGATGCGTCGCGCTCTGGATGCAGGC CACGAGGTCGGCCTGCATGCATGGGATCACCATGGCTGGCAAGCCAATGCCGGACGCTGGAACGATCGCCAGTTGACCGCGCAAATACACCGTGGGGTCG ACTGCCTGAGCGACATTTTAGGCAACCCGGTGATCTGCTCCGCAGCAGCGGGCTGGCGTGCCGACCAGCATGTCGTGCAGGCCAAGCAGGCGTTTGGCTT CCGCTACAACAGCGACTGTCGCGGCGCTACCCTGTTTCGCCCGTTATTGGCTGATGGCAGACTCGGCACGCCGCAGATCCCGGTGGACTTGCCGACCTTC GACGAGGTGGTCGGCCCACAGCTCCAGCCAGGGGCCTTCAACGAATACATCCTCAACCGCTTCGCTGCGCAACGGCTCAACGTCTACACCATTCATGCTG AAGTCGAAGGCATTGTCATGGCGGACGGCTTCAGGCAGCTTTTAAGGCAGGCCGATGCACGGGAAATCGAGTTCAACCCGCTGGGCCAGCTGCTGCCGGA ATCCATCGAGCAACTGCCTTGCGGACAAGTTGTTCGCGGTCACCTGCCCGGTCGCGAAGGCTGGCTGGGGGTGCAACAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGCACTCCAGATACCGTGATGGCGCACTCCTGTTAGCGGCATTCTTGCTGGCCTACCTGCTACCACTGGGTTTCCATGGTTTGTGGATTCCCGATGAAAC CCGTTATGCCCAGATAAGCCAGGAAATGCTTCACAGCGGCAACTGGATCGCGCCGCACTTCATGGGCTTGCGTTACTTTGAAAAACCGGCTGCCGGTTAC TGGCTGATTGCCTTGGGCCAGGCGGTGTTTGGCGAGAACCTGTTCGGCGTGCGCATTGCTTCGGCGATAAGCACCGGTTTAAGTGTCTTGCTGGCCTACA TGCTGGCGGGAAAGATCTGGCGCGACCCGCGCAAAAGCTTCGCCAGCGCACTGCTGTTCATGAGTTTCGGTTTCGTCGCCGGCCAAGCCGGTTACAGCAA TCTCGACCCGCAATTCACCCTCTGGACCAACTTGACGCTGGTAGCGTTCTGGTACGCCGTGCACAGCATCGGCCAAGCCCGCCTGCTAGCCTGGACGTTG
|
|
| Amino Acid Sequence |
>4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase
MQAGLRIDVDTYRGTREGVPRLLDILDEAQVKATFFFSVGPDNMGRHLWRLARPTFFWKMLRSRAASLYGWDILLAGTAWPGKPIGRDLGPLMRRALDAG HEVGLHAWDHHGWQANAGRWNDRQLTAQIHRGVDCLSDILGNPVICSAAAGWRADQHVVQAKQAFGFRYNSDCRGATLFRPLLADGRLGTPQIPVDLPTF DEVVGPQLQPGAFNEYILNRFAAQRLNVYTIHAEVEGIVMADGFRQLLRQADAREIEFNPLGQLLPESIEQLPCGQVVRGHLPGREGWLGVQQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|