Strain | Pseudomonas amygdali pv. tabaci str. ATCC 11528 scaffold5.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCGAAGAAATCTCGGTCGGTGTCATTGACGCCGAGGTTCAGCACAAGGCTGTCTCCATGCGCGTGCTGACGGTCGATGACTCGTCGGTGGCCCGCAAGCA AGTGAGCCGCTGCCTGGAAACCGTCGGGGTGGAGGTGGTCGCGCTCAACGATGGTCGTCAGGCGCTGGACTACCTGCTCAAGATGGTCGCAGAAGGCAAA AAGCCTGAAGAAGAGTTCCTGATGATGATCTCCGACATTGAAATGCCGGAGATGGATGGCTATACCCTTACCGCAGCAATACGTAATGATCCACGCATGC AGAAGATGCACATCACCTTGCATACCTCGTTGTCAGGGGTATTCAACCAGGCGATGGTCAAGAAAGTCGGCGCGGATGACTTTCTCGCGAAATTCCGGCC TGATGATCTGGCGGCCAGGGTCGTTGCGCGGATCAATGCAGCAGAATAACCAGCCGGGGGCGTCGTCCCCGGTGATTCACATGATTTGAGAGGCGGCACC
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DNA Sequence for Gene |
>AAY86_RS13650
TTGTCTACGGGTAATTTGGATTTTGATCAGTTCCGGGTATTTCTGGAAAAAGCCTGTGGCATCTTGCTTGGGGAAAACAAGCAGTATCTGGTGTCCAGCC GCCTCAACAAACTGATGGAGCAGCAAAGCATCAAGTCGCTTGGCGAGTTGGTTCAGCGCATCCAGACCCAGCCGCGCAGCGGGTTGCGCGAACAGGTTGT CGATGCGATGACCACCAACGAAACCCTGTGGTTTCGCGATACCTATCCGTTCGAAGTGCTGAAGAACAAAGTGCTGCCCGAGCAGATCAAGGCCAGCCCT GGTCAGCGACTGCGCATCTGGTCGGCGGCCTGTTCATCGGGCCAGGAACCGTACTCACTGTCGATGTCGATCGATGAGTTCGAGCGCGCCAATCAGGGCC AGCTCAAATCGGGCGTGCAGATTGTTGCCACCGATTTGTCTGGTGCAATGCTCAACAACTGCAAGACTGGCGAGTACGACAGCCTGGCTATCGGCCGCGG CTTGTCGCCGGATCGTCTGCAGCGTTTCTTTGATGTAAAAAGTCCGGGTCGCTGGGTCGTCAAGACGCCGATCAAGAGCCGTGTGGAGTTCCGCTCGTTC AACCTGCTCGACAGCTACGCCTCGCTGGGCAAGTTCGACATCGTGTTCTGCCGCAACGTATTGATCTACTTCTCCGCTGAAGTGAAGAAGGACATCCTGC TGCGCATCCACGGTACGCTCAAGCCAGGCGGTTACCTGTTTCTGGGGGCTTCCGAAGCGCTCAATGGTTTGCCGGATCACTATCAGATGGTTCAGTGCAG CCCCGGGATCATCTATAAGGCCAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CGGTCTGTCAGTTGCCTGCGCTGAAAAAAGAGACCTTCGGGTCTCTTTTTTTGTGCGCGGCTGAAAACAGCTTCGATCGTCTGCCCATCGATTCATGTTT GCGTACTGTTACTCACCAGTTTGGCAAAAGCGTTGGCGGCGGCGCTCTGGTATCCGTTTTTACGCCGCAGCAGCGCAACCGTTCGCCCAGGCAGGGCAGG GATCGTCTGAACTTCGCGCAACCCGGGCTGCTCGCGAACGATGGCATCGGGAAGAATGGTCGCCATGCGCCCCTGGGCAACAACCTTGAGCAAAATGGCG ATCGAGTTCGCCTCCAGGTTGACCGCAGGCTTGAAATTCTGCGTCTGGCACCAGGCATCCAGCAGCTGGCGAGTGGCGAATCCGGGGGCGAGCAAGGCAA AGCGAAGCGTTTGCAGGTCCTCAAGTGTCAGCGCTGTCTGTTTTTCGGGGGCAGGTTTTGCCATGACCAGGCACAGTTGTTCATCGAACAGAGGCTGGCT
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Amino Acid Sequence |
>chemotaxis protein CheR
MSTGNLDFDQFRVFLEKACGILLGENKQYLVSSRLNKLMEQQSIKSLGELVQRIQTQPRSGLREQVVDAMTTNETLWFRDTYPFEVLKNKVLPEQIKASP GQRLRIWSAACSSGQEPYSLSMSIDEFERANQGQLKSGVQIVATDLSGAMLNNCKTGEYDSLAIGRGLSPDRLQRFFDVKSPGRWVVKTPIKSRVEFRSF NLLDSYASLGKFDIVFCRNVLIYFSAEVKKDILLRIHGTLKPGGYLFLGASEALNGLPDHYQMVQCSPGIIYKAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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