Pseudomonas amygdali pv. tabaci ATCC 11528, AAY86_RS13420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas amygdali pv. tabaci str. ATCC 11528 scaffold5.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCCGCTCTTGGGCGTGTGGTGCGGCGCAGATTTGTGACGCAGAGCGTCACCCACGGCATTCCCACGCTGGAGCGTGAGGAACGATCATCTCAACTATCG TGCGACGCTCCGCATTGCAAGCCGTTCCGGGCGCTCTGCGTCCGCTCTGTGCGATTCCCACGCAGAGCGTGAGGAGCGATCATCTCAACTATCGTGCGAC GCTCCGCGTCGCATGCCGTTCCGGGCGCTCTGCGTCCGCTCTGTGCGATTCCCACGCCGGAGCATGAGGAGCGATCATCTCAACTATCGTGCGACGCTCC GCGTCGCATGCCGTTCTGGACGCTCTGCGTCCGCTCTTGAAGATTTTCTGACTGCGCAAGGTATGCCGGTTTCACGTTAATTCTGCCTTTAAAGCCTTAC CAGCACTGGCTTTGTAAAAGTTGGACAGCTTTTTGCAACAGGGTCGATACAGGTCGCCATCGGCGTCAATGTTTTGATCTAGTGCGCAGGTAAACAATCA
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| DNA Sequence for Gene |
>AAY86_RS13420
GTGGATCGTTCTCAGATATTCAGTAGCGCACGCAGCAATATCACTGGCCTGGGCCGTGGTCAGTTGGGCGTTCCGCTGTTGTTGCTGGTCATGATGGCAA TGATGATGTTGCCTATGCCGCCGTTCCTGCTGGACGTGTTCTTCACGTTCAACATTGCACTGTCCATCGTCGTGTTGCTGGTGTGTGTTTACGCTCTGCG GCCGCTGGACTTCTCGGTGTTTCCAACCATTCTGCTGGTCGCCACGCTGTTGCGTCTGGCACTGAACGTTGCTTCCACGCGAGTGGTCATGCTTCACGGT CAGGACGGTCACGCCGCTGCGGGCAAGGTGATTCAGGCCTTCGGTGAGGTGGTGATCGGTGGTAACTATGTTGTCGGTATCGTGGTGTTCGCGATTCTGA TGATCATCAACTTCGTAGTAATCACCAAAGGTGCCGGCCGTATTTCCGAGGTCAGCGCGCGTTTCACCCTCGACGCGATGCCAGGCAAACAGATGGCAAT CGACGCCGACCTCAACGCCGGTCTCATCGATCAGCCAGAAGCCAAGCGTCGCCGTGCTGAAGTCGCTCAGGAAGCCGAGTTCTACGGTTCCATGGACGGT GCCAGCAAATTCGTGCGCGGCGATGCAATTGCCGGTTTGCTGATTCTGTTCATCAACCTGATCGGCGGCATGCTGGTCGGTATTCTGCAACACAACATGA CGTTCGCTGATGCAGGCCGCGTTTATACCCTGCTGACCATCGGTGACGGTTTGGTGGCGCAATTGCCATCACTGCTTCTGTCCACTGCCGCAGCGATCAT GGTGACCCGCGCTTCCGGTTCGGAAGAGATGGGCAAGCTGATCAATCGTCAGATGTTCGCCTCGCCCAAGGCCCTGGCAGTTTCCGCTGCGATCATGATC GTAATGGGACTGGTGCCGGGCATGCCGCACTTCTCCTTCATCAGCCTCGGCCTGGTGGCTGCGGGTGGTGCGTATCTGCTCTGGAAGAAAGAGAACCAGG TGAAAGTCGAGGCGCTGGCCGAAGTGCAACGCCAACAGGACCTGCTGCCTTCGCCGACCCGTGTTCAGGACGCCAAGGAGCTGGGTTGGGATGACGTCAC CCCTATCGACATCATCGGCCTGGAAGTGGGTTATCGCCTGATTCCGCTGGTGGACCGCAATCAGGGTGGTCAACTGCTGGCGCGTATCAAAGGCGTGCGC AAGAAGCTGTCGCAAGAGCTGGGCTTCCTGATGCCGACCGTACACATCCGTGACAACCTTGATCTGGCACCCAGCGCCTACCGTCTGACGCTGATGGGCG TGATTCTGGCCGAGGCCGAGATTTATCCGGATCGCGAGCTGGCGATCAACCCCGGTCAAGTGTTCGGCACCCTGAACGGCATCACCGCCAGAGACCCGGC GTTTGGTCTGGAGGCCGTTTGGATCGAAATCAGCCAGCGCAGCCAGGCGCAGTCGCTGGGTTATACCGTAGTGGACGCCAGTACTGTGGTGGCAACCCAC TTGAACCAGATTCTCTATAAGCACTCTCATGAGCTGATTGGTCACGAAGAAGTCCAGCAGTTAATGCAATTGTTGGCCAAAAGCTCGCCCAAACTGGCTG AAGAGCTGGTCCCTGGTGTGCTGTCCCTGTCCTCGCTGCTCAACGTGCTGCAAGCGCTTCTGGCTGAGCATGTACCTGTGCGTGATATTCGTAGCATTGC GGAAGCTATCGCCAACAACGCTGGCAAGAGTCAAGATACCGCCGCTTTGGTGGCTGCCGTGCGAGTGGGTCTGAGCCGCGCAATCGTCCAAAGCATTGTA GGTGTTGAGCCGGAGCTGCCTGTTATCACTCTGGAGCCAAGGTTGGAACAGATATTGCTCAATAGTTTGCAGAAGGCTGGTCAGGGTCAGGAAGAAGGCG TTCTTCTTGAGCCAAGCATGGCTGAGAAGCTCCAGCGTTCGTTGATTGAGGCCGCCCAGCGTCAGGAGATGCAAGGGTTGCCGGTAATTCTTCTGGTAGC AGGGCCTGTCCGGGCGATGCTGTCACGATTTGGACGATTGGCTGTACCGAACATGCATGTTCTGGCGTATCAGGAAATTCCGGACAACAAGCAAGTAACC ATCGTAGCGACTGTCGGGCCGAACGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTAGTGAGTCATGCAAGTTAAGCGATTTTTCGCCGCCGATATGCGTCAAGCCATGAAACTGGTTCGCGATGAGCTGGGCGCCGAGGCGGCCATCATCGG TAACCGGCGCATTGCCGGTGGCGTAGAGCTGACTGCCGCTCTGGATTACAAGCTGTCCGCCCTGGCACCGCGTGTGCCGAACATGGAGCTCGAAGACGAG CTGCGCAAGACCCAGTCGCGCATCGTCTCTGCTCAGGCCGAATTGAACAACCGCAGCGACAGTGACGCGTCGATCAATCTTCAGCTGTTTTCCGGCAAAC CGGTCAGCGCTGTCGATACGCACATCGAGCCGACGCTCGAAGAGCCGCCACGACCATTCGCGTACACGCCGCCTGCGCCCGCAGAGCCTGCTGTCGGCCA GCGCGCCTATGATTCGATGCGCTCCGAATTGAACGGCTTGCGCGAGCTGCTGGAAGTTCAGCTTGGCTCCCTGGCCTGGAACCAGCTGCAGGGCAGTCGT
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| Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MDRSQIFSSARSNITGLGRGQLGVPLLLLVMMAMMMLPMPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFSVFPTILLVATLLRLALNVASTRVVMLHG QDGHAAAGKVIQAFGEVVIGGNYVVGIVVFAILMIINFVVITKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQPEAKRRRAEVAQEAEFYGSMDG ASKFVRGDAIAGLLILFINLIGGMLVGILQHNMTFADAGRVYTLLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEEMGKLINRQMFASPKALAVSAAIMI VMGLVPGMPHFSFISLGLVAAGGAYLLWKKENQVKVEALAEVQRQQDLLPSPTRVQDAKELGWDDVTPIDIIGLEVGYRLIPLVDRNQGGQLLARIKGVR KKLSQELGFLMPTVHIRDNLDLAPSAYRLTLMGVILAEAEIYPDRELAINPGQVFGTLNGITARDPAFGLEAVWIEISQRSQAQSLGYTVVDASTVVATH LNQILYKHSHELIGHEEVQQLMQLLAKSSPKLAEELVPGVLSLSSLLNVLQALLAEHVPVRDIRSIAEAIANNAGKSQDTAALVAAVRVGLSRAIVQSIV GVEPELPVITLEPRLEQILLNSLQKAGQGQEEGVLLEPSMAEKLQRSLIEAAQRQEMQGLPVILLVAGPVRAMLSRFGRLAVPNMHVLAYQEIPDNKQVT IVATVGPNG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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