Pseudomonas amygdali pv. tabaci ATCC 11528, AAY86_RS11945

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas amygdali pv. tabaci str. ATCC 11528 scaffold4.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGGCGACAACGCGGCCAAGGTCAAGCTGACGCTGGAAGACAACAGCGTCTATGGCCAGGAAGGCAAGCTGGAGTTCTCCGAAGTATCAGTTGATCAGAC TACAGGCTCGGTCACCTTGCGCGCCGTGTTCCCGAACCCGGAACATCGCTTGTTGCCTGGCATGTTCGTCCACGCGCAATTGCAGGCTGGCGTCAGTGCG AAAGCCATTCTGGCACCGCAGCAAGGCGTGACCCGCGACCTGAAAGGCACGCCGACCGCCATGATCGTCAACCAGGACAACAAGGTTGAAATGCGTACGC TGGTGGCCAACCGCACCGTGGGCAGCGACTGGCTGATCGAAGACGGCCTGAAAGAAGGTGATCGGGTCATTACCGAAGGCTTGCAGTACGTCAAACCAGG CGCCGAAGTGAAAGTCGCCGAAGCGACCAACGTCAAAGGAGCAAACCCGGCACCTGCCCCGGCCACTGATAAAGCCGCAGGCAGCAAAGGGGAGTAACCC
DNA Sequence for Gene
>AAY86_RS11945
ATGTCGAAATTCTTTATTGATCGACCCATTTTTGCCTGGGTTATTGCCCTCGTGATCATGCTGGTCGGTGCGCTGTCGATTTCCAGCCTGCCGATCAACC AGTACCCGAGCATCGCACCGCCAGCCATCGGTATCCAGGTCACCTATCCGGGCGCCTCCGCTCAGACGGTGCAGGACACTGTGGTGCAGGTGATCGAGCA ACAGCTCAACGGTATCGACAACCTGCGTTATGTGAGCTCGGAAAGTAACTCCGACGGCAGCATGACCATTACCGCGACCTTCAATCAGGGTACCAACCCT GATACGGCGCAGGTTCAGGTGCAGAACAAGCTCAACCTCGCGACCCCGCTGTTGCCACAGGAAGTGCAGCAACAGGGTATCCGCGTGACCAAGGCAGTGA AGAACTTCCTGATGGTGATCGGCCTGGTGTCCGAAGACGGCAGCATGGGCAAGGAAGACCTGGCCAACTACATCGTGTCGAACATGCAGGACCCGATTTC CCGGACCTCCGGTGTGGGTGACTTCCAGGTGTTCGGTTCGCAGTACGCCATGCGTATCTGGCTGGACCCGGCAAAGCTGAACAACTTCCAGCTGACTCCG GTGGACGTGAAAAACGCGATCACCGCGCAGAACGTCCAGGTATCGTCCGGCCAGTTGGGTGGCCTGCCGTCCATCAGCGGCCAGCAGCTGAACGCCACGA TCATCGGCAAGACGCGTCTGCAGACCGCCGAGCAGTTCGGCAACATCTTCCTCAAGGTCAACACCGACGGTTCGCAGGTTCGCCTCAAGGACGTCGCGAC TGTCGGCCTGGGCGCAGAGAACTACAGCACCGATTCGCAGTTCGACGGTAAACCGGCATCGGGTCTGGCAATCAAACTCGCGACCGGTGCCAACGCACTG GATACCGCCAAGGCTATTCGCGCGACCGTTTCGTCGCTGGAGCCGTTCTTCCCGCCAGGCATGAAAGTCGTGTACCCGTATGACACCACGCCAGTGGTCA GCGAATCGATCAATGGTGTGGTGCACACCCTGATCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAAAACTTCCGCGCCACGGTCAT CACGACCATGACCGTACCGGTAGTATTGCTGGGTACGTTCGGCATCCTCGCGGCATTCGGCTTCACCATCAACACCCTGACCATGTTCGGTATGGTGCTG GCCATCGGCTTGCTGGTGGACGATGCGATCGTGGTGGTGGAAAACGTCGAGCGGGTCATGGAGGAGGAAAAGCTCTCCCCGCGCGACGCCACGATCAAAT CCATGACCCAGATCCAGGGTGCGCTGGTCGGTATTGCGCTGGTGCTGTCGGCGGTTCTGCTGCCCATGGCGTTCTTCGGCGGCTCTACCGGGGTGATCTA CAAACAGTTCTCGATCACCATCGTCTCGGCCATGGCCCTGTCGGTGGTTGTCGCCCTGATCTTCACCCCGGCGCTGTGCGCCACCATGCTCAAGCCTATC GATCACGAGAAGCACGGCCAGCCAAAACGTGGTTTCTTCGGCTGGTTCAACCGCACCTTTGACCGCAGCGTTCTGAGCTACGAACGTGGCGTCGGCAACA TGCTCAAGCACAAATGGCCGGCGTATCTGGGCTATATCCTGATCTGCGCAGGCATGGTCTGGATGTTCATGCGTATCCCGGCCGCGTTCCTTCCGGAAGA AGATCAGGGCGTCATCTTTGCCCAGATCCAGACCCCGGCAGGCTCCTCTACCGAGCGTACGCAGGAAGTCATCGACAACATGCGTGAATACCTGCTGACC AAGGAAAGCGGTGCAGTGAAGTCGGTGTTCTCGGTAAACGGCTTCAACTTTGCGGGCCGCGGTCAAAGCTCGGCGATTGCGTTCGTCATGCTCAAGCCGT GGGAAGAACGTGATTCCAACAACAGCGTCTTCGAACTGGCCAAGCGCGCTCAGGGCTATTTCTTCAGCCTGCGCGACGCAATGGTGTTCGCGGTCGTTCC ACCGTCTGTTCTCGAGCTGGGTAACGCCACAGGTTTCGACGTTTACCTGCAGGATCAGGGCGGCGTGGGTCACGACAAACTGATGGAGGCGCGTAACCAG TTCCTCGGCATGGCAGCGCAGAGCAAGATTCTGGCAGGCGTGCGTCCGAACGGGCTGAATGACGAACCGCAGTACCAGTTGATCATCGACGACGAACGCG CCAGTGCGCTGGGCATTACCCTGTCGGACATCAACAACACACTGTCCATCGCGTTGGGCGGCAGCTACGTCAATGACTTCATCGACCGTGGCCGTGTGAA GAAGGTGTACATCCAGGGCGATGCAGGTGCCCGTATGACGCCTGAAGACCTCAAGAAGTGGTACGTGCGCAACAGCTCGGGTGAAATGGTGCCGTTCTCG GCCTTCGCCAGCGGCAAATGGACCTACGGCTCACCGAAGCTGTCGCGCTACAACGGCGTGGCAGCAGAGGAAGTGCTCGGTACTCCTGCCCCGGGTTACA GCAGCGGCGAGGCGATGGCCGAGGTAGAAGCCCTGGCCAAGAAACTGCCGCAAGGTATCGGCATTTCGTGGACCGGTCTGTCCTACGAGGAACGTTTGTC CGGCTCGCAGGCCCCTGCCCTCTACGCGCTGTCATTGCTGGTGGTGTTCCTGTGTCTGGCGGCGCTGTATGAAAGCTGGTCGATCCCGATCGCGGTCATC CTCGTGGTGCCGCTGGGGGTTATCGGTGCACTGATGGCAACCAGCCTGCGTGGCCTGTCCAACGACGTGTTCTTCCAGGTGGGCTTGCTGGTGACGGTGG GTCTGGCGGCGAAGAACGCCATTCTGATCGTCGAGTTCGCCAAAGAGCTGCACGAACAGGGCAAGAGCCTGGTCGACTCGGCAATCGAGGCGTGCCGCAT GCGTCTGCGCCCAATTATCATGACGTCCATGGCGTTTATCCTCGGCGTTGTGCCGCTGGCAATCTCCACGGGCGCAGGTTCAGGTAGTCAACATTCGATC GGTACTGGTGTAATTGGCGGTATGATCACCGCCGTTATCCTGGCGATCTTCTGGGTGCCCCTGTTCTTTGTCTCGGTTTCAGGGCTCTTCAAGAGCAAGA AGAAACATATTTCACACGATGAGGCTGGCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAGTCATTGATCTCTCTTGCAGTTACCGCGTTCATTCTCGGCGGCTGCTCTTTGATCCCCGAGTACAAGCAGCCGGAAGCACCGGTCGCCGCTCAATA TCCGCAAGGGCCGGCGTACTCGCCGGTCGAAGGCGCCAAAATGGCTGCCGCGGAGCAAGGCTGGCGGCACTTCTTCAATGATCCGGCGCTGCAACAGCTG ATTCAGACTGCACTGCTCAACAACCGCGACCTGCGGGTCGCGGCCCTGAACATTGACGCTTACCGTGCTCAGTACCGTATTCAGCGCTCGGACCTGTTCC CTGCTGTTTCGGCGACAGGTAGCGGTACTCGTCAACGCGTGCCAGCCGACCAGTCGCAAACCGGTCAGGCAGGCATCACCAGCAGCTACTCGGCCAGCCT GGGCGTCAGCTCGTACGAGCTGGACCTCTTCGGCCGGGTCCGCAGCCTCAGCGAGCAGGCGCTGGAGACCTACTTCTCCAGCGAAGAAGCGCGTCGCAGC
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSISSLPINQYPSIAPPAIGIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNP DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGSQYAMRIWLDPAKLNNFQLTP VDVKNAITAQNVQVSSGQLGGLPSISGQQLNATIIGKTRLQTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANAL DTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMVL AIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPI DHEKHGQPKRGFFGWFNRTFDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTPAGSSTERTQEVIDNMREYLLT KESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDSNNSVFELAKRAQGYFFSLRDAMVFAVVPPSVLELGNATGFDVYLQDQGGVGHDKLMEARNQ FLGMAAQSKILAGVRPNGLNDEPQYQLIIDDERASALGITLSDINNTLSIALGGSYVNDFIDRGRVKKVYIQGDAGARMTPEDLKKWYVRNSSGEMVPFS AFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGEAMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPIAVI LVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSI GTGVIGGMITAVILAIFWVPLFFVSVSGLFKSKKKHISHDEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site