Strain | Pseudomonas amygdali pv. tabaci str. ATCC 11528 scaffold4.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCGGCGACAACGCGGCCAAGGTCAAGCTGACGCTGGAAGACAACAGCGTCTATGGCCAGGAAGGCAAGCTGGAGTTCTCCGAAGTATCAGTTGATCAGAC TACAGGCTCGGTCACCTTGCGCGCCGTGTTCCCGAACCCGGAACATCGCTTGTTGCCTGGCATGTTCGTCCACGCGCAATTGCAGGCTGGCGTCAGTGCG AAAGCCATTCTGGCACCGCAGCAAGGCGTGACCCGCGACCTGAAAGGCACGCCGACCGCCATGATCGTCAACCAGGACAACAAGGTTGAAATGCGTACGC TGGTGGCCAACCGCACCGTGGGCAGCGACTGGCTGATCGAAGACGGCCTGAAAGAAGGTGATCGGGTCATTACCGAAGGCTTGCAGTACGTCAAACCAGG CGCCGAAGTGAAAGTCGCCGAAGCGACCAACGTCAAAGGAGCAAACCCGGCACCTGCCCCGGCCACTGATAAAGCCGCAGGCAGCAAAGGGGAGTAACCC
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DNA Sequence for Gene |
>AAY86_RS11945
ATGTCGAAATTCTTTATTGATCGACCCATTTTTGCCTGGGTTATTGCCCTCGTGATCATGCTGGTCGGTGCGCTGTCGATTTCCAGCCTGCCGATCAACC AGTACCCGAGCATCGCACCGCCAGCCATCGGTATCCAGGTCACCTATCCGGGCGCCTCCGCTCAGACGGTGCAGGACACTGTGGTGCAGGTGATCGAGCA ACAGCTCAACGGTATCGACAACCTGCGTTATGTGAGCTCGGAAAGTAACTCCGACGGCAGCATGACCATTACCGCGACCTTCAATCAGGGTACCAACCCT GATACGGCGCAGGTTCAGGTGCAGAACAAGCTCAACCTCGCGACCCCGCTGTTGCCACAGGAAGTGCAGCAACAGGGTATCCGCGTGACCAAGGCAGTGA AGAACTTCCTGATGGTGATCGGCCTGGTGTCCGAAGACGGCAGCATGGGCAAGGAAGACCTGGCCAACTACATCGTGTCGAACATGCAGGACCCGATTTC CCGGACCTCCGGTGTGGGTGACTTCCAGGTGTTCGGTTCGCAGTACGCCATGCGTATCTGGCTGGACCCGGCAAAGCTGAACAACTTCCAGCTGACTCCG GTGGACGTGAAAAACGCGATCACCGCGCAGAACGTCCAGGTATCGTCCGGCCAGTTGGGTGGCCTGCCGTCCATCAGCGGCCAGCAGCTGAACGCCACGA TCATCGGCAAGACGCGTCTGCAGACCGCCGAGCAGTTCGGCAACATCTTCCTCAAGGTCAACACCGACGGTTCGCAGGTTCGCCTCAAGGACGTCGCGAC TGTCGGCCTGGGCGCAGAGAACTACAGCACCGATTCGCAGTTCGACGGTAAACCGGCATCGGGTCTGGCAATCAAACTCGCGACCGGTGCCAACGCACTG GATACCGCCAAGGCTATTCGCGCGACCGTTTCGTCGCTGGAGCCGTTCTTCCCGCCAGGCATGAAAGTCGTGTACCCGTATGACACCACGCCAGTGGTCA GCGAATCGATCAATGGTGTGGTGCACACCCTGATCGAAGCGATCGTGCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAAAACTTCCGCGCCACGGTCAT CACGACCATGACCGTACCGGTAGTATTGCTGGGTACGTTCGGCATCCTCGCGGCATTCGGCTTCACCATCAACACCCTGACCATGTTCGGTATGGTGCTG GCCATCGGCTTGCTGGTGGACGATGCGATCGTGGTGGTGGAAAACGTCGAGCGGGTCATGGAGGAGGAAAAGCTCTCCCCGCGCGACGCCACGATCAAAT CCATGACCCAGATCCAGGGTGCGCTGGTCGGTATTGCGCTGGTGCTGTCGGCGGTTCTGCTGCCCATGGCGTTCTTCGGCGGCTCTACCGGGGTGATCTA CAAACAGTTCTCGATCACCATCGTCTCGGCCATGGCCCTGTCGGTGGTTGTCGCCCTGATCTTCACCCCGGCGCTGTGCGCCACCATGCTCAAGCCTATC GATCACGAGAAGCACGGCCAGCCAAAACGTGGTTTCTTCGGCTGGTTCAACCGCACCTTTGACCGCAGCGTTCTGAGCTACGAACGTGGCGTCGGCAACA TGCTCAAGCACAAATGGCCGGCGTATCTGGGCTATATCCTGATCTGCGCAGGCATGGTCTGGATGTTCATGCGTATCCCGGCCGCGTTCCTTCCGGAAGA AGATCAGGGCGTCATCTTTGCCCAGATCCAGACCCCGGCAGGCTCCTCTACCGAGCGTACGCAGGAAGTCATCGACAACATGCGTGAATACCTGCTGACC AAGGAAAGCGGTGCAGTGAAGTCGGTGTTCTCGGTAAACGGCTTCAACTTTGCGGGCCGCGGTCAAAGCTCGGCGATTGCGTTCGTCATGCTCAAGCCGT GGGAAGAACGTGATTCCAACAACAGCGTCTTCGAACTGGCCAAGCGCGCTCAGGGCTATTTCTTCAGCCTGCGCGACGCAATGGTGTTCGCGGTCGTTCC ACCGTCTGTTCTCGAGCTGGGTAACGCCACAGGTTTCGACGTTTACCTGCAGGATCAGGGCGGCGTGGGTCACGACAAACTGATGGAGGCGCGTAACCAG TTCCTCGGCATGGCAGCGCAGAGCAAGATTCTGGCAGGCGTGCGTCCGAACGGGCTGAATGACGAACCGCAGTACCAGTTGATCATCGACGACGAACGCG CCAGTGCGCTGGGCATTACCCTGTCGGACATCAACAACACACTGTCCATCGCGTTGGGCGGCAGCTACGTCAATGACTTCATCGACCGTGGCCGTGTGAA GAAGGTGTACATCCAGGGCGATGCAGGTGCCCGTATGACGCCTGAAGACCTCAAGAAGTGGTACGTGCGCAACAGCTCGGGTGAAATGGTGCCGTTCTCG GCCTTCGCCAGCGGCAAATGGACCTACGGCTCACCGAAGCTGTCGCGCTACAACGGCGTGGCAGCAGAGGAAGTGCTCGGTACTCCTGCCCCGGGTTACA GCAGCGGCGAGGCGATGGCCGAGGTAGAAGCCCTGGCCAAGAAACTGCCGCAAGGTATCGGCATTTCGTGGACCGGTCTGTCCTACGAGGAACGTTTGTC CGGCTCGCAGGCCCCTGCCCTCTACGCGCTGTCATTGCTGGTGGTGTTCCTGTGTCTGGCGGCGCTGTATGAAAGCTGGTCGATCCCGATCGCGGTCATC CTCGTGGTGCCGCTGGGGGTTATCGGTGCACTGATGGCAACCAGCCTGCGTGGCCTGTCCAACGACGTGTTCTTCCAGGTGGGCTTGCTGGTGACGGTGG GTCTGGCGGCGAAGAACGCCATTCTGATCGTCGAGTTCGCCAAAGAGCTGCACGAACAGGGCAAGAGCCTGGTCGACTCGGCAATCGAGGCGTGCCGCAT GCGTCTGCGCCCAATTATCATGACGTCCATGGCGTTTATCCTCGGCGTTGTGCCGCTGGCAATCTCCACGGGCGCAGGTTCAGGTAGTCAACATTCGATC GGTACTGGTGTAATTGGCGGTATGATCACCGCCGTTATCCTGGCGATCTTCTGGGTGCCCCTGTTCTTTGTCTCGGTTTCAGGGCTCTTCAAGAGCAAGA AGAAACATATTTCACACGATGAGGCTGGCCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCAAGTCATTGATCTCTCTTGCAGTTACCGCGTTCATTCTCGGCGGCTGCTCTTTGATCCCCGAGTACAAGCAGCCGGAAGCACCGGTCGCCGCTCAATA TCCGCAAGGGCCGGCGTACTCGCCGGTCGAAGGCGCCAAAATGGCTGCCGCGGAGCAAGGCTGGCGGCACTTCTTCAATGATCCGGCGCTGCAACAGCTG ATTCAGACTGCACTGCTCAACAACCGCGACCTGCGGGTCGCGGCCCTGAACATTGACGCTTACCGTGCTCAGTACCGTATTCAGCGCTCGGACCTGTTCC CTGCTGTTTCGGCGACAGGTAGCGGTACTCGTCAACGCGTGCCAGCCGACCAGTCGCAAACCGGTCAGGCAGGCATCACCAGCAGCTACTCGGCCAGCCT GGGCGTCAGCTCGTACGAGCTGGACCTCTTCGGCCGGGTCCGCAGCCTCAGCGAGCAGGCGCTGGAGACCTACTTCTCCAGCGAAGAAGCGCGTCGCAGC
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Amino Acid Sequence |
>multidrug efflux RND transporter permease subunit
MSKFFIDRPIFAWVIALVIMLVGALSISSLPINQYPSIAPPAIGIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNP DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGSQYAMRIWLDPAKLNNFQLTP VDVKNAITAQNVQVSSGQLGGLPSISGQQLNATIIGKTRLQTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANAL DTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMVL AIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPI DHEKHGQPKRGFFGWFNRTFDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTPAGSSTERTQEVIDNMREYLLT KESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDSNNSVFELAKRAQGYFFSLRDAMVFAVVPPSVLELGNATGFDVYLQDQGGVGHDKLMEARNQ FLGMAAQSKILAGVRPNGLNDEPQYQLIIDDERASALGITLSDINNTLSIALGGSYVNDFIDRGRVKKVYIQGDAGARMTPEDLKKWYVRNSSGEMVPFS AFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGEAMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPIAVI LVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSI GTGVIGGMITAVILAIFWVPLFFVSVSGLFKSKKKHISHDEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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