Pseudomonas amygdali pv. tabaci ATCC 11528, AAY86_RS08775
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas amygdali pv. tabaci str. ATCC 11528 scaffold3.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCAACCCTGCCGCGCAGCATTCGTTTATTGTCACTGAAGAGCTGGCCCCGACTACCAGCCTGGAAGACGTCAGTATCAACTGGCGCAACGAGCCGCCGG AGCCCCGTCTGAAAAGAGCGTTTATCGCCGAAGTTGCCCGTTTGGTCGGTATGATGCACCGCGCCGGCGTGAACCATCGCGACTGTTACATCTGTCATTT TCTGTTGCACACCGACACACCGGTCACCGCTGACGATTTCAGATTGTCGGTCATCGACCTGCACCGTGCCCAGACGCGTCGGGCAATAACACCACGCTGG CGCAACAAGGACCTGGCCGCGCTGTACTTTTCAGCGCTGGACATTGGTCTCACGCGACGCGACAAGCTGCGTTTTCTCAAGGGTTATTTCCAGAAACCGC TGCGCGAAATACTGCTCAAGGAGGCGCCGCTGCTGACTTGGCTGGAGAAGAAGGCCGAGAAGCTTTATCAGCGCAAAGTGCGCTACGGGGATGCACTCTG
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| DNA Sequence for Gene |
>AAY86_RS08775
ATGGCGGGCTGGAAGCTTGAGCCCGAGTACGCTTTTCTGCAGCAGGATTTCGGCAGTCTGGATTCCGTGTTTGCCTTGCAAGGCCAGCAGTTGACCCGCG ACCCGCTGTCCGACGTCATCCGCGTCGAGCGTGCCGGGGTTTACTACTACGTCAAACGCTACGTAGGTGCGGGCAAAGGCCTGCGCCGTTACATCGGCAA GCCCAGGGTCAAGTCCGAGTGGCAGAACCTCAAGCGTTTTGCCAAATGGGGCATTCCCACGGCAGAAGTGGTGGCCTGGGGGCTGGAGCGCAACGGCGCA GCGTATGATCGCGGCGCACTGATCACTCGCGGCTTGCCCAATACCGAAGACTTGTCTGCGCTGGCGCAACGCAAGGATCCGCGACTGGCCGACCAGCAAT GGGTCGACGCTGTAAGTCACCAGCTGGCTGCCTGTACCCGGACCATGCACGACAACCATTTCACACATAATGATTTGAAATGGCGCAACCTGTTGGTTGA TGACGAAGGTCGGCTGTTTTTCATCGATTGCCCTAATGGCGCATTCTGGTGGAGCTTCATGCTGCGCTATCGGATCACCAAGGATCTGGCGTGCCTGGAC AAGGTCGCGAAGTATCACTTGTCGGCCACCCAGCGCCTGCGCTTCTACCTGCAGTACCGTCAGCGAACGCGGTTGAACGCCTCCGACAAAAAACGTATCC GACATATCGTCAGCTTTTTCGAGGGCCGTGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTTTTTATTGCCAGTGCCGACCTGCCGTTACTGGCGCGTCACAACCTGGCTGATTTTGAATCGCTTTGGAACATCAGGCTCGATGCGGTCGACGAGCC CAATACCGGGCGCGGCGGCTGGAGCAGTGTGTTCCGCCTCGACCTGGAGGGTCAGGGTTTTTACCTCAAGCGCCAGAGCAATTACCTGACTCGCACGTTG CATCATCCGTTTGGCGAGCCGTCCTTCTCTCGTGAGTTTCGTAATATCAGTCGCTATCGCAAGCTGGGCATTCCCGCGCTGCAAGCGGTGTTTTATGGCG AGCGCAAGGTCGACGGGGAGCGCCGGGCGATCCTCATGACGCGTGCGCTGGACGGCTGGACCGATCTCGACGAACTGTTGCAGCAGTGGAACCAGATGGA GAGCGTGCAGCGTCTGGCGGTACTTCACGCCTGCGGCCAATTGGCCCGCACACTGCACGGTGCCGGGCAGGTTCATGGCTGCTTTTATCCCAAGCATATT
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| Amino Acid Sequence |
>LPS biosynthesis protein
MAGWKLEPEYAFLQQDFGSLDSVFALQGQQLTRDPLSDVIRVERAGVYYYVKRYVGAGKGLRRYIGKPRVKSEWQNLKRFAKWGIPTAEVVAWGLERNGA AYDRGALITRGLPNTEDLSALAQRKDPRLADQQWVDAVSHQLAACTRTMHDNHFTHNDLKWRNLLVDDEGRLFFIDCPNGAFWWSFMLRYRITKDLACLD KVAKYHLSATQRLRFYLQYRQRTRLNASDKKRIRHIVSFFEGRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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