Strain | Pseudomonas amygdali pv. tabaci str. ATCC 11528 scaffold3.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GGTAGGCGGTGGGTTGTTGCTGGTTTCGCAGTTCACGCTGGCCGCGGATACCAAAAGCGGGTTGCGTGCGGGGTTCTCGAAAGCCGCTGCTCCAGCGCTG GGCGCCGAGCTGTTCGACTATCTATTGAGTCAGGCCAGAATCGCGCATACCGCTGTGGCTGCGGGCCAATTTGGTGCGGACATGCAAGTGCATTTGATAA ATGATGGCCCAGTGACATTTTTGTTCGATACATAAGCTACGATTTCATCGTTTCTCCCCTGAATTTTCCGGTCGCACGGGAAATAAATTTCTTTGTCATA CCTGATGCGTTGTGGCGCGCGCTGCTGGATAATCGCGCGTTACGGGGATCGACACTGTTGGTCCATTTGGTATGACAAAAGCGGTTCTGACACCGGGTTG GGGAATCATTAAGCCCATTCGGAGTCGGAACAATGCTCGCCAACCCGGCATTGATAGCTGGCCGTTGGTTTTTTCATCTGTTTTTCGGCGAGGGTTGCTC
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DNA Sequence for Gene |
>AAY86_RS08025
GTGATTGTTAGTCCCTGTGATGCTCCAAAGACACCTGTCAAGCGGTTGCGTAGTGCACTTCTGGCAAGCTCGGCCCTTGTATGCCTGTTCAGTGCAGGTC AGCTGTGGGCGTTCAATCTTGATGATGTAACGGCAAAAGCCAAAGAACTGGCCGGGCAGAAGTTCGAGGCTCCAAGGAGCAATCTGCCGAACGAGCTTCG CGATATGAAGTTTGCCGACTATCAGAAGATTCGCTTCCGCGATGACAAGGCCGAATGGGCGGGCGAGAAGACTCCGTTCAAAGTGTCTTTCTACCACCAG GGCATGCACTTCGACACGCCGGTCAAGATCAACGAAGTGACCGCCACCAGCGTCGACGAAATCAAGTACGACTCCAGTCGTTTCGATTTCGGCGATCTGA AAATCGACCCCAAATCCACCGAGAAACTGGGTTATGCCGGTTTCCGTGTCCTGTATCCGATCAACAAGGATGACAAGCAGGACGAAATCATGACCATGCT GGGCGCGAGCTACTTCCGCGTGATCGGCAAGGGTCAGGTCTACGGCCTGTCCGCACGCGGCATGGCAATCGACACTGCATCGCCGTCTGGTGAGGAGTTC CCGCGCTTCAAGGAATTCTGGATCGAGAAGCCGGGCCCGGATGACAACCATCTGGTGATCTTCGCGCTGCTCGACTCGCCGCGCGCTACCGGTGCTTATC AGTTGACCCTGCGTCCGGGCACCAACACTCTGGTTGACGTCAAATCGCGCATGTTCCTGCGTGACAAGGTCAACAAGCTCGGTGTTGCCCCATTGACCAG CATGTTCCTGTTCGGTGCCAACCAGCCTTCGCGTGTACCTAACTACCGTCGCGAGCTGCACGACTCCAGCGGTCTGTCGATTCAGGCTGCCAACGGTGAG TGGTTGTGGCGTCCGCTGAACAACCCTAAACATCTGTCGATCAGCAGCTTCTCGGTCGAAAACCCGCGTGGTTTCGGTCTGCTGCAACGTGGCCGTGACT TCAGCCAGTACGAAGACTTGGATGACCGCTATGACAAACGTCCAAGCGCCTGGATCGAGCCGAAGGGCGACTGGGGCAAGGGCACCGTCGAGCTGGTCGA AATTCCGACTGCCGACGAGACCAACGACAACATCGTGGCCTACTGGAAGCCTGAGACTCTCGCAGAGCCGGGCAAGGAAATGGCATTCGATTACCGTCTG CACTGGACCATGCAGGAAAACTCGATCCACTCGCCGGATCTGGGCTGGGTCAAGCAGACCCAACGCTCCATCGGTGATGTGCGTCAGTCCAACCTGATCC GTCAGCCAGATGGCAGCCTTGCCTTCCTGGTCGACTTCGTGGGCCCGGTACTGGCCGCATTGCCGGAAGACAAGACTATTCGCAGCCAGGTGACCACTGA CGACAACGTCGAACTGGTGGAAAACAACCTGCGCTATAACCCGGTCACCAAAGGCTACCGCCTGACCCTGCGTGTGAAGGTCAAGGATTCCGGCAAGCCA ACCGAAATGCGCGCTTACCTGCTACGTGAAATCCCTGCCGAACCGGGCAAGGAACCTGCGCTGCTCGTTGCAGACAAAGCTGAAGAGAAGAAGGCTGCTG CCAAGGAAGCTGCCAAGCCGGCAGTTGCCAAGGAATCTGCCAACGACCAGGTAGAAATCGCCAAGGCCGATGCGCCGAAGCCTGAAGCCGCCAAACCCGA GACCGCCAAGCCTGAAGCTGGCAAGGCCGACGCTGCGAAAGGTAAAGGCGAAGTTGCCAAAGCCGATGCAGCCAAAGCCGATGCAGCCAAGGCTGACGTA GCCAAGGACAAGGACGGTAAAGAGATTCAGCAGCCTGAAACCGAGGCAGCACCCACCCATCCGGAACCGGCCAAGACGTTGCAAGTCATGACCGAGACCT GGAGCTATCAGTTGCCGAGCGATGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TTCTCTACCGGTGCCAGTGTCTCTGAACGAGTACCTGGCGCATTTACCGATGAGCGACGAGCAGCGGGCAGAACTTGCCGGCTGCAAGACCTTCGCCGAG TTGCATGAGCGTCTTTCTGCGCAGCCGGTCAATGACCCTGCCGAGGCCGCTCAGGCTTCGGTGGGTCGCCGCCTTACGCTGACCACCGCAGACCAGCTGG AGGACGCCGAGATGCTCGGCGTCGATGCCAGCGGTCGCCTGTGCCTCAAGGCCACACCGCCCATTCGCCGGACCAAGGTCGTGCCAGAACCATGGCGCAC CAACATTCTGGTACGCGGCTGGCGTCGCCTGACCGGCAAGACCAACCCGCCCAAGCCAGAGCACAACGATCTGCCTCGTGATCTGCCCAAGGCGCGCTGG CGCACCGTCGGTTCGATCCGTCGCTACATCCTGCTGATCCTGATGCTGGGTCAAACGATCGTGGCTGGCTGGTACATGAAGGGCATTCTGCCGTATCAGG
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Amino Acid Sequence |
>glucan biosynthesis protein G
MIVSPCDAPKTPVKRLRSALLASSALVCLFSAGQLWAFNLDDVTAKAKELAGQKFEAPRSNLPNELRDMKFADYQKIRFRDDKAEWAGEKTPFKVSFYHQ GMHFDTPVKINEVTATSVDEIKYDSSRFDFGDLKIDPKSTEKLGYAGFRVLYPINKDDKQDEIMTMLGASYFRVIGKGQVYGLSARGMAIDTASPSGEEF PRFKEFWIEKPGPDDNHLVIFALLDSPRATGAYQLTLRPGTNTLVDVKSRMFLRDKVNKLGVAPLTSMFLFGANQPSRVPNYRRELHDSSGLSIQAANGE WLWRPLNNPKHLSISSFSVENPRGFGLLQRGRDFSQYEDLDDRYDKRPSAWIEPKGDWGKGTVELVEIPTADETNDNIVAYWKPETLAEPGKEMAFDYRL HWTMQENSIHSPDLGWVKQTQRSIGDVRQSNLIRQPDGSLAFLVDFVGPVLAALPEDKTIRSQVTTDDNVELVENNLRYNPVTKGYRLTLRVKVKDSGKP TEMRAYLLREIPAEPGKEPALLVADKAEEKKAAAKEAAKPAVAKESANDQVEIAKADAPKPEAAKPETAKPEAGKADAAKGKGEVAKADAAKADAAKADV AKDKDGKEIQQPETEAAPTHPEPAKTLQVMTETWSYQLPSDE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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