Pseudomonas amygdali pv. tabaci ATCC 11528, AAY86_RS26560
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas amygdali pv. tabaci str. ATCC 11528 scaffold13.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGGCCAGCGTTTTCTGGAAGTGTGGTCGGGCCTGCCCGTGCTGTATCTGTTGATCATTCTCGCCAGCTTCGTGCAACCCAACTTCTGGTGGCTGCTG GGCATCATGCTGCTGTTCTCCTGGATGAACCTGGTAGACGTGGTGCGTGCCGAGTTCCTGCGTGGCCGGAATCTGGAATATGTAAGAGCCGCGCGAGCGC TGGGCATGGAGAACGGCGCGATCATGTTCCGCCATATCCTGCCCAACGCCATGGTATCGACCATGACCTTCATGCCGTTCATCCTCACCGGGGCCATCGG CACCTTGACTGCACTGGACTTCCTGGGCTTCGGCCTGCCCGCCGGATCACCTTCGCTGGGCGAACTGGTAGCGCAGGGCAAATCCAACCTGCAGGCACCC TGGCTGGGCATCAGCGCGTTCGCTGTGCTGGCCATTATGCTGAGCCTGCTGGTGTTCATCGGCGAATCCGCCCGCGATGCTTTCGACCCAAGGAAATAAG
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| DNA Sequence for Gene |
>AAY86_RS26560
ATGAGCAATGACAATCTGATCGAAATCCGCGATCTGGCGGTCGAGTTCGTGACGGGCGACTCACGGCAACGGGTGGTCGAGAACATCAGTTTTGACATCC GTCGGGGTGAAACCCTCGCACTGGTCGGCGAAAGCGGCTCGGGCAAATCAGTTACAGCGCATTCGATCCTGCGCCTGCTGCCCTACCCCATTGCCAGTCA TCCGAGCGGCACTGTCCGCTACGGCGGTGGAGACCTGCTGAAAGTGGAAGAGAAAAAGCTGCGCTCGATCCGTGGCAACCGTATCGCCATGATCTTCCAG GAACCGATGACCTCGCTGAACCCGCTGCACTCGGTCGAAAAACAAATCAACGAGGTACTGGGCCTGCACAAGGGCCTGACCGGCAAGGACGCCACCAAAC GCACGCTGGAGCTTCTTGAGCTGGTAGGCATCCCAGAGCCACACAAACGGCTCAAAGCCTTGCCACACGAGCTGTCAGGCGGCCAACGCCAGCGTGTAAT GATAGCGATGGCACTGGCCAACGAGCCGGAGCTGCTGATTGCCGACGAACCGACCACTGCACTGGATGTCACGGTACAGCTGAAAATTCTTGAATTGCTC AAGCAATTGCAGGCTCGCCTGGGCATGGCATTGCTGCTTATCAGCCACGATTTGAACGTGGTGAGGCAAATAGCCAACCGAGTATGTGTCATGCAGCGCG GTTGCATCGTCGAACAGGCATCGTGCGAAGAATTGTTCCGTTCGCCGCAACATCCTTACACCAAAGTGTTGCTCAGCGCAGAGCCCAGCGGCGGTCCTTC GACCAACCCGGCCGGCGCCCCGCTGCTTGAAGTCGAGGACCTGAAAGTCTGGTTCCCGATCAAAAAGGGCCTGCTCAAGCGCACGGTCGACCACGTCAAG GCGGTGGACGGCATACGCTTCAGCCTGCCGCAAGGGCAAACACTGGGCATCGTGGGTGAAAGCGGGTCGGGCAAATCGACGCTGGGGCTGGCGATTCTTC GGCTGATCGGCAGCCAGGGCACCATACGTTTCAAGGGCAACGCGCTAGAATCTCTTTCGCAACAGCAGATCCGTCCGCTGCGCAGGCAGATGCAAGTGGT GTTCCAGGACCCGTTTGGTAGTTTGAGCCCGCGTATGTCAGTGGGTGAAATCGTTGGCGAAGGCTTGCGAATCCATGGCATGGGCACGGCCGCCGAGCAA CAGACGGCGATCATCGAAGCACTCAGGGAGGTTGGCCTGGATCCGGATACCCGGCACCGCTACCCTCACGAGTTCTCCGGTGGCCAACGGCAGAGGATCG CCATTGCACGTGCGCTGGTATTGAAACCGGCGCTTATCTTGCTGGACGAGCCGACGTCAGCCCTCGACCGGACCGTACAGCGTCAGGTCGTCGAGCTGCT TCGCTCGCTGCAAGCCAAGTACAATCTGACGTATTTGTTCATCAGCCATGACCTGGCTGTCGTCAAAGCGCTAAGCCACCAGCTGATGGTGGTCAAGCAA GGCCAAGTGGTCGAACAGGGTGCAGCGCAGGACATCTTCGCCGCACCGCAACATCCTTATACACAGCAGCTGCTGGAAGCCGCCTTTTTGGCGCCGGTAG CTGTCGATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGAAGAGGAACAACACATGGGTTTTCTCGCCGGTAAGCGCGTCCTGATCGTCGGTGTCGCCAGTAAACTGTCCATCGCATCCGGCATTGCTGCCGCCA TGCATCGTGAAGGTGCAGAGCTTGCTTTCACCTACCAGAACGACAAGCTCAAGGGCCGTGTCGAAGAGTTCGCCGCAGGCTGGGGCTCAGGTCCTGAGCT GTGCTTCCCTTGCGATGTGGCCAGCGACGAAGAGATCACCAAGGTCTTTGAAGAGCTGAGCAAGAAGTGGGACGGCCTGGACGTGATCGTTCACTCGGTC GGCTTTGCTCCGGGTGACCAGCTCGACGGCGACTTTACCGACGCCACCACTCGCGAAGGTTTCCGCATCGCTCATGACATCAGCGCCTACAGCTTCGTGG CCCTGGCCAAGGCTGGTCGCGAAATGATGAAAGGCCGCAATGGCAGCCTGCTGACCCTGTCGTACCTGGGCGCAGAGCGCACCATGCCCAACTACAACGT
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| Amino Acid Sequence |
>microcin C ABC transporter ATP-binding protein YejF
MSNDNLIEIRDLAVEFVTGDSRQRVVENISFDIRRGETLALVGESGSGKSVTAHSILRLLPYPIASHPSGTVRYGGGDLLKVEEKKLRSIRGNRIAMIFQ EPMTSLNPLHSVEKQINEVLGLHKGLTGKDATKRTLELLELVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELL KQLQARLGMALLLISHDLNVVRQIANRVCVMQRGCIVEQASCEELFRSPQHPYTKVLLSAEPSGGPSTNPAGAPLLEVEDLKVWFPIKKGLLKRTVDHVK AVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLIGSQGTIRFKGNALESLSQQQIRPLRRQMQVVFQDPFGSLSPRMSVGEIVGEGLRIHGMGTAAEQ QTAIIEALREVGLDPDTRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQAKYNLTYLFISHDLAVVKALSHQLMVVKQ GQVVEQGAAQDIFAAPQHPYTQQLLEAAFLAPVAVD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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