Strain | Pseudomonas alkylphenolia strain KL28, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
TCCGCGATGCGCTGGATGCCTTTGCCCGTTTCGATGCCGACCTGGCACTGTCGGTGGCCCAGTATGACAAGACCATCGACCGCGAGTACAAGACCGCACT GCGCGAGCTGGTGACCTACATGATGGAAGATCCGCGTTCGATCTCGCGGGTACTCAGCGTGATCTGGGCCTTGCGTTCACTGGAGCGGATCGGCGACCAC GCGCGCAACATCTCCGAGCTGGTGATCTACCTGGTGCGCGGTACCGATGTGCGTCACCTGGGCCTCAAGCGCATGAAAGAAGAGGTCGAGGGCGGCAGCG AAAAGGCTAATGTTCCGGCTGAAACTGACGATAAGTAAGACTGCCCCGAGAACGAACGCCCGGCCCTGGCCGGGCGTTTTCGTTTGCGGTCGAGCACCTC AAGGCAGCCGCGAACGAAACCACGAGTCCCGGCGTGAGCCAATGTTTGGCAAATGGCCATTAGTCAGCGTTATGCTAGTCGGGATTCAATAGGAGTGGCG
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DNA Sequence for Gene |
>PSAKL28_RS25990
ATGAGTAAAGTCAGTGTGTTGGTTGTGGATGATGCGCCGTTCATTCGCGACCTGGTGAAGAAGTGTCTGCGCAACTATTTCCCGGGGATTGTCATCGAAG ACGCGGTCAACGGTCGCAAGGCCCAGACATTGCTGGCGCGTGAAGCTTTCGACCTGGTCCTGTGCGACTGGGAAATGCCGGAAATGTCCGGGTTGGAGCT GCTGACCTGGTGCCGTCAGCAGGAGTCGATGAAGACGTTGCCGTTCATCATGGTGACCAGCCGCGGCGACAAGGAAAACGTGGTCCAGGCGATCCAGGCC GGTGTTTCTGACTTCGTCGGCAAGCCGTTCACCAATGAGCAATTGCTGACCAAGGTGAAGAAGGCCCTGACCAAGGTTGGCAAGCTCGATACCTTGCTGG CCAGCGCCCCGACGCGTGCCAATTCAGCTTTTGCCAATGACTCGCTGAGCGCCCTCACCGGTGGCCGTGCCGAAACGGTAAAACCGACAGCACCGGCTGC TCCGGTGGCGGCGGCCAAGCCCCTGATCAACGCGCCCAAGCCCACTGCTGCCGCTGCCGCACCTGCGGGGCGTGGCCAAGGGCAACTGCGTCTGCCAAGC GGTGTGCAGCCGTGCGTGATCAAGGCCCTGAGCCTCAAGGAGGCGCTGCTGGTGGTCCGCCGTGGCGAGACCCTGCCACAGGTGCTCGAAGGTGCTGTGC TCGATCTGGAGCAGGGTGAGAACGCCGAAGTCGCCCGCCTCAATGGTTACCTGCATGCGGTGGCGGCGCTGGAGCCCAAGCCGGACAGCGACTGGTTGCA ACTGACCTTCAAGTTCGTCGATCAGGATGCCCAGAAGCTGGACTACCTGTCGCGGCTGATTGCCCGTGGTACGGCGCAGAAGCATTTCGTGCCGGGAGCT TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TAAAACCTATCGCGGGGCAAGCCCGCTCCCACAGGGGGAGTTGAATCCCCTGTGGGAGCGGGCTTGCCCCGCGATGAATACACCGCTCGTCCACTGGCAC ACCCCTGAAACACTCCCATCCTCTCTCCGGCAAAATCCCCTGCTAGTCTTCGACAGACTTCAACTGTCAAAAAGCCACTAACCATGCAGGCACATTCGCT GCTGTTCTGCGCCTTGCTCGTGGCTTGCAGCCCGACCCTGGCCTCGACTTTCTACAAAAGCACCGATACCAACGGTGTGGTCTCGTATTCCGACCGGCCA CTGCCTGGCGCAAAGGCCTTTGTCTTTCGCGACCAGATGGTCGAGCAGCTGGAAGGTCAGGTGAAACTGCACGCTATCAAGTTCGCCAGCGGCGTGAGCT TCAGCGCCCGCAACGACACCCATGCGCCGGTGGAGGTGGAGCTGCGCCTGGAGCGTCTGGGTAACGCCAAGGGCGCAGGTACGCGGCTTGTCCGGCGTGT
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Amino Acid Sequence |
>chemotaxis protein CheY
MSKVSVLVVDDAPFIRDLVKKCLRNYFPGIVIEDAVNGRKAQTLLAREAFDLVLCDWEMPEMSGLELLTWCRQQESMKTLPFIMVTSRGDKENVVQAIQA GVSDFVGKPFTNEQLLTKVKKALTKVGKLDTLLASAPTRANSAFANDSLSALTGGRAETVKPTAPAAPVAAAKPLINAPKPTAAAAAPAGRGQGQLRLPS GVQPCVIKALSLKEALLVVRRGETLPQVLEGAVLDLEQGENAEVARLNGYLHAVAALEPKPDSDWLQLTFKFVDQDAQKLDYLSRLIARGTAQKHFVPGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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