Pseudomonas alkylphenolia KL28, PSAKL28_RS20080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas alkylphenolia strain KL28, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GACCCCCGGCATGAAGACGGTATCTGGTACGTCAATCTCAATCACCTGAACGCCATTTACCAGGCTGTCAGCCAAGCTCAGGGACTGAGCGTTGCGACAG GCGATGAACACACAAAGCAGCAGGAGATGCGACGGCTGAACCTGCACGTACTGGTCGCTGAAGACAACATCATCAACCAACTGATTCTCAGGGATCAGCT TGAAGAGCTCGGTTGTACCGTCGTGCTGGCCAGCGATGGCGATGAAGCCTTGCAGCACTGGCAGCCTGGCCAGTTCGACATGATCCTGAGCGATGTGAAC ATGCCCCGCATGAATGGTTATGCGCTAACCAGAGAACTGCGCCGGCAAGGGTGCTCGGTGCCAATTATTGGCGCGACGGCCAATGCCATGCGCGGCGAAG AAGATCTGTGCATGGCCGCTGGCATGAACGGCTGCCTGGTCAAACCTTTTACGTTGCAAACCCTGCTCAACTGCCTGGCGCCTTATCAAAGGAAGCACCC
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| DNA Sequence for Gene |
>PSAKL28_RS20080
GTGAAGCCCTTTAACATTCTGATTGTCGAAGACCACCCATTCCAGCGTATGTACCTGCAACACCTGTTAAGCGAACTGGGTGAATTCAATCTGGACTGCG CACGGGACGGCAACGAGGCGCTGGAACGTTTGCAGCAACGTGACTTCGACTTCGTCCTCACCGACCTTTTGATGCCCGGCATGGATGGTGTGCAGTTCAT CCAGCGTCTGGCCGGGCTGCGTTGTAAACCTGACCTGGCAATCATGAGCGCCGCCTCTCGGCGTATGCTGATGGCGGCCAGCCTGGTCGCCAAAAATCTC GGCGTCGATGTGATCGGACTGATCTCCAAGCCCGTGTCGCCTGGCGCCCTGCGTAGCGTGACCGAGCAACTGCGGCGCAAGCATCAAGTCGCTGCGCAAG CCGCTGCTGCCCCGATCGCCGAGTTTGACCGCCAGACCCTGCTCCAGGCCCTTAACAGCCGCGCTTTTCAGGCCTGGTTCCAACCCAAAAAATCTTTGCA CAGCGGTCGTATCGTCGCTGCCGAAGCCTTGGTGCGCTGGATGCATCCTGAACAGGGGGTGTTATTGCCCGGCTCGTTCCTGCCTGCGCTGAAAGCGTTT GGCATGGAGGAGCGCTTGCTGTGGCTAATGCTCAAACAGGCCATGGACGCCCAGGCCCGCTGGCGCGAACAGGGCTATGACATTCCGGTGTCGATCAACT TGCCCACCCACCTGCTCAACAGCCACGATCTGGCAGACCGCCTGCTGGAGTTTGTCCTCCATCATCAGGGCATCCCCGGCAAACTCTGCTTCGAGCTGAT GGAGAGCTCCACGCCGGAAGACATCAGCAACTTCTACGCCGGGGCCTGTCGCTTACGCATCAAGGGTTTCGGCCTGTCCCAGGATGATTTCGGCCAGGGT TACAGCTCTTACATGAACCTGGTGTCGGCGCCGTTCACCGAACTGAAGATCGACCGTGCACTGGTTCAGGGCTGCCATGAAAACGAAAACATGACCTCGG CCCTGACGAGTATTGTCGCCCTGGGCCGCAAGCTCGGACTGACTGTGGTGGCCGAAGGCGTGGAAACCTCCCAGGAGCTTGCCCTGTTGCGCAAGGTCGA CTGCGATCAAGCCCAAGGCTTCCTGATTTCCCATGCGGTGTCGTCGGATCAGTTCCAGCAACTGTTGAACCTTGATGGAGCGGCGAGCCTTTATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCATCCCACCAACCCTCAGCCACTATCAGAGGTAAAATTCGTCAGATATCGATATTTTTCGGCTCTGCGGACACTGTTCATGAACAAAGACAACGCCCC ACTGGAAAACCTTACCCGCAGTTCGTTGCGCCTGAACACGGGGATGATGATTCTGCTGGGACTGGTGTTGTTGCTGGTCGGCACCAGTTTTTGGTCGTTC CAGCGCCTGATCGAAGAAAACCATGACACCGTACGCTTTCACTTTGCCCGCCTGCTGGAAAACATCCAGGAGCAGGAAGCCTTTCTACAAACGCTGATCG AGCAGAAACAATTGCTCAACGATGGCGGCCCTCAGGTACATGCGCTCGCCCCTCTACCCAATGAGGGGCCGAATATTTATCAAGGGCAGGCGTTTGCGTT CTCGATGCCCTTCAGCGTCAAACTCGATAAGTACAACCTCGCTGCCCGCGAACAAGCGAAGGTTCTTGGTCTGGGGGCAAACCTGGCTGGCTTGTACAGT
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MKPFNILIVEDHPFQRMYLQHLLSELGEFNLDCARDGNEALERLQQRDFDFVLTDLLMPGMDGVQFIQRLAGLRCKPDLAIMSAASRRMLMAASLVAKNL GVDVIGLISKPVSPGALRSVTEQLRRKHQVAAQAAAAPIAEFDRQTLLQALNSRAFQAWFQPKKSLHSGRIVAAEALVRWMHPEQGVLLPGSFLPALKAF GMEERLLWLMLKQAMDAQARWREQGYDIPVSINLPTHLLNSHDLADRLLEFVLHHQGIPGKLCFELMESSTPEDISNFYAGACRLRIKGFGLSQDDFGQG YSSYMNLVSAPFTELKIDRALVQGCHENENMTSALTSIVALGRKLGLTVVAEGVETSQELALLRKVDCDQAQGFLISHAVSSDQFQQLLNLDGAASLY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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