Pseudomonas alkylphenolia KL28, PSAKL28_RS18800 (fliN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0009288 bacterial-type flagellum
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0071973 bacterial-type flagellum-dependent cell motility
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003774 motor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009425 bacterial-type flagellum basal body
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00956
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02480
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG palk02040 Flagellar assembly 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG palk02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:2.30.330.10:FF:000001 Flagellar motor switch protein FliN - - 65 156 4.9E-50
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 122 137 4.3E-28
PANTHER PTHR43484 - - - 50 156 9.1E-35
MobiDBLite mobidb-lite consensus disorder prediction - - 52 68 -
SUPERFAMILY SSF101801 Surface presentation of antigens (SPOA) IPR036429 SpoA-like superfamily 73 154 2.35E-25
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 109 122 4.3E-28
MobiDBLite mobidb-lite consensus disorder prediction - - 47 68 -
Gene3D G3DSA:2.30.330.10 - IPR036429 SpoA-like superfamily 64 156 1.1E-30
Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IPR001543 Flagellar motor switch protein FliN-like, C-terminal domain 77 146 3.2E-24
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 76 92 4.3E-28
NCBIfam TIGR02480 JCVI: flagellar motor switch protein FliN IPR012826 Flagellar motor switch FliN 73 148 9.2E-33
PRINTS PR00956 Flagellar motor switch protein FliN signature IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb 93 109 4.3E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.