Pseudomonas alkylphenolia KL28, PSAKL28_RS12100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas alkylphenolia strain KL28, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTCGTCGAGCAGCAGCAGGTCGCGGCTGCAATCGAAGGCAACGGCATGACGACCATCGAGCTGCAGTACCTGGCTGTCCTGCAACTGTGTGATGAGCGGT TCGATATGCTGTGGATCGATCTGGTCGGGCCATTCGCCCATCAGCCCGAGCAAGGTGGCACGGTCAGTGGCGTGGCCGACACCGGTGGCCGACAGCGAGC CATACAGACGAACCTCTACCCGACTGACTTGCTCCAGCAGGCCCTGCTCACGCAAGGCCTGGGCAAAGGTCGCAGCCGCCCGCATCGGGCCCACGGTGTG GGAGCTGGAGGGCCCGATGCCAATCTTGAAAAGGTCGAAAACACTGATAGCCATGCTAATGCCTGCACGCTCAAGCGACGAATGTCGCCCTGCGGCGTTA TGAAAAAATTGAAGGGTTTCGCGAAGTTGCGCGATACTGCCCGGTCACCGTGGCATTGACCAACGAAACTTTCTAAGCAAGCCTTTAGCAGTACTAAACG
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| DNA Sequence for Gene |
>PSAKL28_RS12100
ATGAGACGACAGATGAATGGCCAGATGTATGTCTGGCTGCACGTGTTTTCCTGTGCGGCGCGGCACCTGTCGTTCACCCGCTGCGCCGAAGAACTGCACA TCACCCCAGGTGCCGTGAGCCAGCAGATTCGTCAGCTGGAAGAGCGCCTGGGTTTTCGCCTGTTCCTGCGCCGCGCCCGTGGCGTGGAACTGAGCGCCGA AGGCCAGCGCCTGGCACAGACGGTCAGCGAAGCCTACGGCAGCATCGACGCCGAACTGCTGCGCCTGGACGCCGGCGAAATTCGCGGCACCCTGCGCCTG CGTTCGATCCCCTCGTTTCTGGCCAAATGGCTGACCCCGCGCCTGCCCCGCCTGCAGCAACGCTACCCGGACATCCAGCTGCGCCTGGTGGCCGAAGACA GCAGTCAGGCTTTGCATGAAGGCGACTTCGACCTGGCCATCGACCTCAACGACGGCAGCTACCCGGGCATGCACTCAACACCGTTGCTTGATGAACAGAT CTTCCCGGTGTGTTCGCCGACCCTGCTGCGGGGCCGCCCGCCCCTGCATGGCCCTGGCGATCTTGCGCACTATCCGTTGCTGCACGACATCACCGCCTGG CGCGGCAGCTCGGAATACGCGGAATGGGAGTTTTATCTGGAAGGGATTGGCGCGAGTGGCCTGGACGTGCGCCGCGGGCACACCTTCAACCGCAACCACC TGACCATTGAAGCGGCAATCGCCGGCATCGGCGTGGCCATCGCCCGACGTACCCTGCTCAATGACGAGCTGGAGCGCGGTACGCTGATCGTGCCGTTCGG TTTGCCGATTGCCAATCACAAGCGCTACGTGCTGCTCTATCCGCCCGGTGGCCTGGCGCATCCGAGCGCCCGGGCGGTGCATGACTGGCTGGTTGAGGAA GCCGAAAGTTTCCGCTCTTTACACGCCCAGGCACAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATCGCTAGTAAGCATGCTTGCCAGTGAAGGCATTGAGCGTGCGCACCAGGATCACGAAATCGAGCCACAGCGACCAGTTGTTGATGTACTCGATGTCAGA GTCGACACGCTGGATCATTTGCTCGATGTCTTTGGTCTCACCCCGGAAACCACGGACCTGCGCCAAGCCGGTCATGCCGGGTTTGATGTTGTGCCGGGCA AAGTAGTCGACGATGTCCTGAGAGTACTGCGTATCGTGTTGCCGGGCGTGCGGGCGCGGCCCCACCAGGGACATTTCGCCCATCAGCACATTGAACAGCT GGGGCAGTTCGTCGAGGCTGGTGCGGCGGATGAAGGCGCCCACCCGGGTCAGCCGCGCATCATTTTTCTGCGCTTGTTTGACCACGCCATCTTCCGGCTC ATGAACAACCATGCTTCTGAATTTCCAGATACGGAAGGACTCCCCGGTCCAGCCCATGCGTTCCTGCCTGAAGAACACTGGGCCCTGGCTGTCGAGTTTG
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MRRQMNGQMYVWLHVFSCAARHLSFTRCAEELHITPGAVSQQIRQLEERLGFRLFLRRARGVELSAEGQRLAQTVSEAYGSIDAELLRLDAGEIRGTLRL RSIPSFLAKWLTPRLPRLQQRYPDIQLRLVAEDSSQALHEGDFDLAIDLNDGSYPGMHSTPLLDEQIFPVCSPTLLRGRPPLHGPGDLAHYPLLHDITAW RGSSEYAEWEFYLEGIGASGLDVRRGHTFNRNHLTIEAAIAGIGVAIARRTLLNDELERGTLIVPFGLPIANHKRYVLLYPPGGLAHPSARAVHDWLVEE AESFRSLHAQAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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