Pseudomonas alkylphenolia KL28, PSAKL28_RS09045
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas alkylphenolia strain KL28, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGGAAAATGCCTGGCCGCAGCTAAAACCGCTGCTTTGATGCTTTTATACTGACCGGCTTTCGGCTAATGTGGCGCCCCCGATTTGGAGCCCCCGATG CCGCGTCCCGCCTGGTCCCTGTTTGCCTATCAATTGATCGAGCCTGACGAACAGCTTGACCTGTTCGCCTGCCAGGAGATCCGCGTCCATCTTGTGGCCC GTCAGCTGGAGCTGGGAGGCTCGGCCGACCGCACGCTGTGCGGCACCTTGTTGCCGGCGCAGCCGCGCTGGTCCACGGTCGAGCGCGGTATTTACCGCGA TCGGCGCCTGTGCACACTGTGCCGGGCCATTCTCGATGCCCAGCGCCGCGGTACGCGGCCTGTGTGGCCGGAACTGTAACGCTCCGATATAACCTTTCAT CCCTTGTAACGCCTTCCTCCGTCCGGATCACTCCCGATTGTGCCGGGGGCGGTGTACAATCGTCGTCTTGACCTCACTGAATTAGCGAAGGATTTCCCGG
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| DNA Sequence for Gene |
>PSAKL28_RS09045
ATGTTGCCGCGCTTTCCCGCCGTCACCCGTTGCCTGTCCCTGGCCGCCCTGCTGGCGGCAGGTCCTGTTGCTGCGCTGGAGTTCCCCCTGCCACCGCCGG GCGAAGATGTCATTGGTCAGGTTCAAGTGATCAAGGCCAAGTACGAAGACACCTTTGCCGATATCGGCACGGCCAACGACCTGGGCTATCTGGAAATGAT CGCCGCCAACCCGGGCGTCGACCCCTGGCTGCCGGGCGCCGGCACCGAGATCATCCTGCCGACCCGTTTCATCCTGCCGCCAGGCCCGCGCGAAGGCATC GTCATCAACCTCGCCGAGTACCGCATGTACTTCTACCCGAAAGGGCAGAACGTAGTGCATACCTATCCGCTGGGTATCGGGCGTGAAGGCTGGGGATCGC CGATCGCCAATACCAAGGTCACGGCCAAGACGCCAAACCCGACCTGGACGCCTCCGGCCTCGATCCGCAAGGAACACGCCGAAGACGGTGACATCCTGCC AGCCGTGGTACCGGCAGGCCCGGATAACCCGCTGGGTCCTTACAAGTTCACCCTGGGCGTACCGGGTTACCTGATTCACGGCTCGAACAAGAAGTTCGGT ATCGGCATGCGCACCAGCCACGGTTGCTTCCGCATGTTCAACAACAACGTGCTGGAGCTGTCGAAGATGGCCCCGGTCGGTGTTCCGGTACGCATCATCA ACGAGCCGTACAAGTTCGGTATCAGCGCTGGCAAGGTCTACCTCGAGGCGCACACGCCGCTGGACGACAAGGGCGATCCGTCGGTGGTCGACAAGCACAC CGCAGTGATCAACGCCTTGCTCAAGCGCGAAGACCTGGCCAACAACCTGCGCATGAACTGGGACATGGTGCGTGACGTGGTTGCCGCTGAGGACGGCATG CCGGTGGAAATCGCCGTGCCAACCACCGGCCAGCAGCCAATGGTTTCAAGCGTACCGCTAGACATGCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCCCAGGGTTGTTGCATCCGAGGCCTGCCATTGTGCAGGCCTCGTCGTTTCTGTCGGTTACTTTCTTGCAGGCAATAAAAAAGCCGACCCACAAGTGGG TCGGCTCCAAATAAAAATCCCGAGGGATAATTACTTACGGCTGGCTTTGTCCAGCATACGCAGAGCGCGCTCGTTAGCTTCGTCAGCGGTCTGTTGTGCT TTTTGAGCAGCAGCCAGAGCGTCGTCAGCTTTGCGGTAGGCTTCGTCAGCGCGAGCTTGTGCACGAGCAGCTGCGTCTTCAGTAGCGGTCAGACGAGCTT CAGTTTCTTTGGATACGCTGCTGCAACCGGTAGCCAGAACTGCGGCCAGAGCCAGAGCAGAAAATTTCAGAACGTTGTTCATCGTGTTCCCCTTCAAGGA CTTTCTATTAAATAGCCATCTCTCAGCAAAGAGAAACTAGCCGGTGTACATAGTACCCATTACTTGTAGTAAGTAAACTGACAGAGCGCAAGAACTGCAA
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| Amino Acid Sequence |
>transpeptidase
MLPRFPAVTRCLSLAALLAAGPVAALEFPLPPPGEDVIGQVQVIKAKYEDTFADIGTANDLGYLEMIAANPGVDPWLPGAGTEIILPTRFILPPGPREGI VINLAEYRMYFYPKGQNVVHTYPLGIGREGWGSPIANTKVTAKTPNPTWTPPASIRKEHAEDGDILPAVVPAGPDNPLGPYKFTLGVPGYLIHGSNKKFG IGMRTSHGCFRMFNNNVLELSKMAPVGVPVRIINEPYKFGISAGKVYLEAHTPLDDKGDPSVVDKHTAVINALLKREDLANNLRMNWDMVRDVVAAEDGM PVEIAVPTTGQQPMVSSVPLDMQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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