Pseudomonas alkylphenolia KL28, PSAKL28_RS05650
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas alkylphenolia strain KL28, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGGCGGCCAGGCCGATCACGACCTCGCGCCGGACCATGAGGTCAGCGGCCGCGCTGCAGCTTCAGGTACAGACGCTCGACTTTCTCTCGGGCCCAGGG GGTGCGGCGCAGGAAAGTCAGGCTCGACTTGATGCTCGGATCGCTCTTGAAGCAGCGGATATCGATGCGCTCGGCCAGCCCTTGCCATTGGTAGTGCTCT ACCAGTGCGGTGAGGATCTGCTCCAGGGTCACGCCATGCAGCGGATTGGGGTTGGCGGTGGTCATGCCTGTGCTCCAGCGAATCAAAGGTGCGCACCTTA GCCCAGGGGTGGGCTGGCTACAAACATTCTAGCGCAGCTGTGTGGGAGATTTGTGGGAGCGGGCTTGCCCCGCGATTGCATGTAGTCAGTCACATCGAAT CGCGGGGCAAGCCCGCTCCCACCGCTATCGGAACACCCACTCACAATGGTAATGTTATATTGTATCAAAATCATTAGCCTACCAAGGAACCCCGCAGCCC
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| DNA Sequence for Gene |
>PSAKL28_RS05650
ATGCGTCGCTTGCCCCTTCGACTCTCCCCTTTCACTGCCGCCCTTTGGCTCGCATCACCCCTGAGCCAGGCCGTGGAGTTGCAGCCCCAGGTCATCACCG CCAACCCGCTGGGCAACAGCGAACTGGCCGCGCCCACCACCGTACTCGAAGGTGACGCGCTGGCCCTGCAACAAAAAGGCAGTCTCGGCCAAACCCTGAA CAACCAGCCCGGCGTCGCCTCGACCTGGTTCGGTCCCGGCGCCAGCCGTCCGGTGATTCGTGGTCTGGACGGCGATCGCATTCGCATTCTGCGCAATGGC GTCGGCGCTCTGGACGCCTCATCGTTGTCCTACGATCACGCCGTACCGCTGGACCCGGCCACCGTAGATCGCATCGAAATCGTCCGCGGCCCGGCCGCCC TGCTCTACGGTGGCAACGCCATTGGTGGCGTGGTCAACAGCTTCGACAACCGCATCCCCACCGATCCCGTCGACGGCATTCATGGCGCTGGCGAATTGCG CTACGGCGGTGCCGACACCACACGTAGCAGCGCCGGCAAGCTGGAAGCCGGCGATGGCCGCTTTGCCTTGCATCTGGACGCCAACAGCCGGCAATTCAAC GACCTGCGCATCCCCGGCTACGCCCGCAGCTCCAAGGTCCGCGACGCCGATGAACCGGGCAGCAAGCATCGCCTGGAAAACAGCGACGGCCGCCAGGATG GCGGTGCTGTCGGCGGTTCCTATCATTGGGATCACGGCTACACCGGCCTGTCCTACAGCCGCTACGACTCGAACTATGGCTCAGTGGCCGAACCCGGCGT GCGCCTGGACATGCAACAGGATCACTACGGTTTCGCCTCCGAGCTGCGCGACCTCGATGGTCCCTTCAGCGCACTGAAGTTCGACGTCGGCTACACCGAT TACCAGCATCGTGAAATGGAAGGCGGCGAAGTGCACACCACCTTCAAGAACAAGGGTTACGAAGCACGGGTCGAAGCACGGCATCAGCCCTGGGGGCCGG TGGAAGGCGTGATCGGCGCGCAGGTCAGCCGCAACGAGTTTTCCGCCCTCGGTGAGGAGGCCTTCGTCCCGCAAAGCGATACCAATAGCCTGGCGCTGTT CATGCTCGAACAATGGCAAGCCAGCGAGCGCCTCAACCTGAGCCTGGGTGGACGCCTGGAACACACCCGCATCGACCCCGACAGCCAGGGCAGCGAGCGA TTCGCCCAGGCCGACAGTGCCAGCAGTTTCACTGCCGCCAGCCTGTCATCCGGTGCGGTCTATACGCTGACGCCGATCTGGTCGCTGGTCACGACCCTGG GTTATACCGAACGCGCACCGACCTTCTACGAGCTGTATGCCAATGGCGCCCACGTTGCCACCGGCACGTTTGAAGTCGGCGATCCGAACCTGAGCAAAGA AAAAGCGATTTCCAGCGACCTGGCCCTGCGCTTCGACAACGGCGTGCACAAAGGCAGTGTCGGGGTGTTCTACAGCCACTTCCGCAACTACATCGGCCTG CTGGCCAGCGGCAATATGCGCGAAGGCCATGACCACGGTCATGACCATGGCGATGAAGACCACGACCATGATCACGATCATGACCACGCCGGTGACGTGC CCGAGTACCTGTACAAAGGTGTGCGGGCGCGCTTCTACGGCTTCGAGGCCCAGGATCGCTGGCAGCTGGCGCAAAACCACTTGGGCAGCTTTGCCCTGGA ACTGTCCGGCGACTACACCCGGGCCAAGAACCTGGACAGCGGCGAAGACCTGCCACGCATTGCTCCGCTGCGCCTGAACAGCGGCCTGCTGTGGGAACGG GAGCGCTGGCAGGCCCGAGTTGATGTGCAGCACGCCAGCGCCCAGCATCGCAAACCGGACAATGAAACCAGTACCGATGGCTATACCACCCTGGGCGCCA GCCTTGGCTATCGCTTTGATATCGGTCAGAGCCAGTGGTTGGCCTTTGTGCGCGCAGAGAACCTCACCGACCAGACCGTGCGCTATGCCAGCTCCATCCT GCGTGATATCGCGCCGGCGCCGGGGCGCAGTGTCGAGGTAGGCCTGCGTACATCCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAAACGAAAGCTGTCGGTGGGAGCGGGCTTGCCCCGCGATTGCGGTTTGTCAGCCAGATCGCATCGCGGGGCAAGCCCGCTCCCACCAACAGCTGCTCCC ACCTTGCTGGACTATTACCAATCCAGCAACGGTCCCTCTTGTTGAATTGACTTTTTTTCTTACAAATTCAGCTATATCCTCTCCGCCGCAAGCTGAACCG CTTCAGTCTCTCCCCCAGAAGCCTTATCGCCGAAGATCCCCAGGACCCGGCGCACTTGCCGTTTTTTCAACAATCAAAAGATAGCGCTATCTCATGCCTC TGATTCATCGTTTCCGCCTTTCCCCCGCCACCCGGACGCTGTTTTCGGGTCTGGCCATCGCCAGCCTCGCCCCCAGCGCCCAGGCCGCCGCGATGTTCGC CAGCGACTCGCCATGGATGCTCGGCGATTGGGGCGGCACCCGCACGGAGCTGGCTGAACGCGGCTACGACTTCACCCTCGGTTACACCGGCGAGATGGGC
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| Amino Acid Sequence |
>TonB-dependent receptor
MRRLPLRLSPFTAALWLASPLSQAVELQPQVITANPLGNSELAAPTTVLEGDALALQQKGSLGQTLNNQPGVASTWFGPGASRPVIRGLDGDRIRILRNG VGALDASSLSYDHAVPLDPATVDRIEIVRGPAALLYGGNAIGGVVNSFDNRIPTDPVDGIHGAGELRYGGADTTRSSAGKLEAGDGRFALHLDANSRQFN DLRIPGYARSSKVRDADEPGSKHRLENSDGRQDGGAVGGSYHWDHGYTGLSYSRYDSNYGSVAEPGVRLDMQQDHYGFASELRDLDGPFSALKFDVGYTD YQHREMEGGEVHTTFKNKGYEARVEARHQPWGPVEGVIGAQVSRNEFSALGEEAFVPQSDTNSLALFMLEQWQASERLNLSLGGRLEHTRIDPDSQGSER FAQADSASSFTAASLSSGAVYTLTPIWSLVTTLGYTERAPTFYELYANGAHVATGTFEVGDPNLSKEKAISSDLALRFDNGVHKGSVGVFYSHFRNYIGL LASGNMREGHDHGHDHGDEDHDHDHDHDHAGDVPEYLYKGVRARFYGFEAQDRWQLAQNHLGSFALELSGDYTRAKNLDSGEDLPRIAPLRLNSGLLWER ERWQARVDVQHASAQHRKPDNETSTDGYTTLGASLGYRFDIGQSQWLAFVRAENLTDQTVRYASSILRDIAPAPGRSVEVGLRTSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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