Strain | Pseudomonas alkylphenolia strain KL28, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
TGGATGGGCCGACGCCAATCTTGAACAGGTCGAACACACTGATGGCCATGCCACCTACCTCCTGATTGAGCAGCCACCCCCAAGCCAGGCCAAGGGCGTT GCAACTGCTACGCTAAATAGGCGGCAATCCGCCGAATTCGCGCATCATCAGGCTTTTGAGCGGACTTCTGACGTCTACAACCGACGCGTTCTTGCCCAGC AACGCCGCCAGCTGTCACGACCGTTTCTGCGCCGTTTTTTTGCGGTGCAGAAGCAGCAAAACTGCGTTTACGGGCTGATAAAAATCTGTAAACGACCTCA TCGACACTGGATACGACCCTGTCTGTACTGGATACGACGCACCCTGTAGGCGTTTGATTTTCGCTGTTAGATGATCGGTATCGACTCGATTGCACGGCAC CTGTCCCGCTATCGCCCGATAGTCAGGCCCGACCGAATGCAAACCATAAAGCACGGCGGTCCCGTGGGACATCCGAGAAAAAACATCAGGAGTCCATCGC
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DNA Sequence for Gene |
>PSAKL28_RS01690
ATGAAAGGTTCACCCTCGCTATTGCTGACCGCGCTACTGAGTGTGCCGCTGTTGGCCCAGGCCACCGAGCCTGAGCAGTGTCATACCGTCAACTTCTCCG ATGTCGGCTGGACCGATATCACCGTGACCACCGCGGTGACCAGTGTGGTGCTGCAATCGCTGGGCTACAAAACCAAGACCACCATGATTTCGGTGCCAGT GACCTACAAGTCGCTGGCCGACGGCAAGAATATGGATGTGTTCCTCGGCAACTGGATGCCGACCATGGAAAACGACATCAAGCAGTACCGTGATGCCGGT ACGGTGGAAACCGTGCGGGCCAACCTGGAGAACGCCAAGTACACCCTGGCCGTACCGCAGGCGCTGTATGACAAGGGCCTGAAAAACTTCGCCGACATTG CCAAGTTCAAGAAGGAACTGGACGGCAAGATCTACGGCATCGAGCCGGGCAACGACGGCAACCGCACCATCCAGAGCATGATCGACAAGAACGCATTTGG CCTCAAGGACGCCGGTTTCAAGGTGGTCGAGTCCAGCGAGGCAGGCATGCTTTCGCAGGTTGAACGTGCCCAGCGCCGCGACACTGCGGTGGTGTTCCTG GGCTGGGAACCACACCCGATGAACACCCGTTTCAAGATGAAATACCTCGACGGCGGCGATGATTTCTTTGGCCCCGACTACGGTAAAGCCACCGTGCTCA CCAATACCCGCAAGCGTTATGTGCAGGAATGCAGCAACGTCGGCCAGCTGCTGAAAAACCTGTCCTTCACCCTGGACATGGAAAGCACCCTGATGGGCAA CGTCCTGGACGACAAGATGAAACCCGACGCAGCCGCCAAGGCCTGGCTGAAAAACAACCCTCAGGTACTCGATACCTGGCTGGCAGGGGTTACCACCGTT GACGGCAAACCGGGCCTGGAGGCGGCCAAGGCCAAACTGACGCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCACTGCCTGCGGCGGGCTGGCCCCGCCGCAGGCTGTCTTCAATTTTTTGCAGGTGGACGCTCGCTATCATGCTGATCGATGAAAAACTCCCTCTGGGCC AGTACATCGCAGGCTTCGTTGAATGGTTGACGCAACACGGCGCCAACTACTTCGATGCTTTCGCTGCGGCACTGGAATACATGATCCACGGTGTAACCGG GGCACTGACCTGGTTCAATCCCTTCGTCCTGATCGGCCTGATTGCAGTGATCGCGCACCTGATCCAGCGCAAATGGGCGCTGACCACCTTCTGCGTGCTG TCATTCCTGCTGATCCTCAACCTCGGTTACTGGCAAGAGACCATGGAGACCCTGGCCCAGGTGCTGTTCGCCACCCTGGTCTGCGTGGCCATCGGCGTAC CGCTGGGCATCCTCGCCGCGCACAAACCGATGTTCTACACCGCCATGCGCCCGGTCCTCGACCTGATGCAGACGGTCCCTACCTTCGTGTACCTGATCCC
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Amino Acid Sequence |
>glycine/betaine ABC transporter substrate-binding protein
MKGSPSLLLTALLSVPLLAQATEPEQCHTVNFSDVGWTDITVTTAVTSVVLQSLGYKTKTTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKQYRDAG TVETVRANLENAKYTLAVPQALYDKGLKNFADIAKFKKELDGKIYGIEPGNDGNRTIQSMIDKNAFGLKDAGFKVVESSEAGMLSQVERAQRRDTAVVFL GWEPHPMNTRFKMKYLDGGDDFFGPDYGKATVLTNTRKRYVQECSNVGQLLKNLSFTLDMESTLMGNVLDDKMKPDAAAKAWLKNNPQVLDTWLAGVTTV DGKPGLEAAKAKLTQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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