Strain | Pseudomonas aeruginosa genome assembly PAMH19, contig MH19_contig28, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCGGCAGCAAGGGCGCCGTCGATATCGACGTGTCCCGTTTGGAAAACGATGACGGCGACCTGCTTAGCGAAGGTCGTCTGAAACTGACTGCCGAGCGAGC GAACAGTGTCAGGGGACGGATCGCGGCCAGGGCTGACCTGCACGCCAGCGTGACAGCCTTTAACCAGGCGGCTGGCGAATTGAGCAGCGAGGGTGCGCTG ATGCTCGAGGCCGATAGCCTCGACAACCGCAGCGGCGGTCTGGTCAGTGCTGATGGCAACATGACCGTTTCCGCCCGGAGGATCGACAACCGTGCGGGCG AAATCGCCAGCCCGGGCCAGGTGACACTGGACGTCGCCGAGCAGTTGGACAACCGAGGCGGCAAGGCCATCGGCGATAGCGGACTTCGCCTCGTCGCGCC ACGGGTACTCAACCAGGACGGCGGGGTACTCGCCAGTCGTGATGGGCTGCGCCTGAATGGCGCCGAACTGTTCAATGGCAACGGCGGCCTGCTCAGCAGC
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DNA Sequence for Gene |
>PAMH19_RS30540
CAGCATAGCATCGACGTCATTCTGGACGGCGTATTGGGCAATCAGGCGGGCAGCTTGAGCAGCCAGGGACGCCTGAGCGTGAAGAGCGGTCGGCTGGACA ACCAGGGCGGTGCAGTCTCCAGCGCCGGGACCCTGTCGCTTTCCAGCCAGGGTGCGTTGAACAACCAGGGGGGCAGGGTGGTCACCGACGCCGGTGCCGT CCTGCGCAGCGCCAGCCTCGACAACAGCCAGGGCGGCATCGTCAGCGCCAAGGGGGCCGCGGAGATCCGTACTGGCAGCCTCAACAATAGCCAGAAGGGC GGCATAGGCAGCGGTGCCGGGCTCGCGCTGGTCGCGGACCTGGTGGACAACAGCCAGAACGGCCGGATCACTGCCAAGGGTGCGATCGATGCCAACCTGA AGGGGCTGGATCAGCAGGGCAGCGGCAGGCTGGTCAGCGATACGGCCATCGCGCTCGATCTGCGCGGGGGAGAACTGGTCAACCGTGCTCAGGGCCTGAT CGCCACGCCTGGAGCCTTGCTGCTGCGGCAACTGGGTGTCGTGGACAACAGTGGCGGTGGCGAGATCTCCAGCGATCGAAGCTTTACCCTCGCCGCGACC GCGCTGAGCAACCGGGGTGGCCGCGTGATCAGCGGCGACTCCCTGACCCTGCGCATCGCCCAGGCACTGGACAACAGCCTCCAAGGCGTTCTTTCCGCAA GCGGAGGGCTGGATGTCGCTGCACTCGTCTTCGACAACCATAGCGGCATCGTTGGTAGCAAGGGCGATACACGCATCGGGGTGAACCGCCTGGAGAACGA GGCAGGCCGCGTGGTCAGCGAAGGCGCCCTGGATCTGACCGCCAAGCAGGTGAGCAGCGCCAAGGGGCGCATTGCCGCGAAGGGCGATCTGCAGGTCACG GTTGGCACCCTCGAGCAGCAGGGTGGAGAACTGGCCAGTCAGGGGACGCTGACTCTCGACGCCGATAGCCTGGATAACCGCAATGGCGGCCTGGTGAGCG CCGATGGCGGGGTCACCGCCGAGGCACGCCAGATCGATAACCGCGGTGGGGAAATATCCAGCGTGGCCAAGGTGGCTCTGGCTGTCCGGGAACAACTGGA CAACCGGGGGGGCAAGGTGATCGGCGACAGTGAGCTGAGCCTAACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGTGTGCTCGCCAGTCGCGATGGATTG CACCTGGACGGCGCGGAACTGCTCAATGGCGATGGCGGCCTGCTCAGCAGCCAACGCCTGGTGGATGTAACGCTCAGTGGTGCATTGGACAACCAGGGGA GCGGTGCACTGGTCAGCGAAGGGTCGCTGACAGTGAAGGCCGACCAGGTCAATAACCAGGCGGGGACTTTCTCCAGTGCGGGTAGCCTGCTCGTTACCAG CCGGGGCGAGTTGAACAACCAGGGTGGCAGGTTGGTGACCGATGCTGGAGCCACCCTGAACAGCACTGGCTTCGACAACAGCCGTGCGGGCCTGGTCAGT GCGAAAGGGGCTGTGGCCATTCGTACCGGAGCCCTGAACAACAGTCAGAAGGGATCCATTGGCGGCAATGCGGGCGTCACCCTGGTCGCCGGGTTGGTCG ACAACGGCCGGGAAGGACGGATCAGCACCAAGGGTACGCTCGACGCCAACCTGAAAGGGTTGCTTCAGCAGGGGGGAGGCTCGCTGGTCGGCGAGCGCGG TGTCACCCTCGACCTCAACGGTGGCACCCTGGACAACCACGACCTCGGTCTGGTTTCAACGCCTGGCGCGCTCCTGCTGCGCCAACTCGGCATGGTGGAC AACAGCGTCGGCGGAGAGATATCCAGCGACCGTGCTTTCACCCTCGCCGCCAACACACTGAACAATCAGGGCGGGCGGCTGATCAGCAGCGAAGCTTTGA CCCTGCGCATCGCCAAGACACTGGACAACAGTCTCAAGGGGCAGGTCCTGGCGACCGACGGACTGGCCATCGAGTCTCAGGTCTTGGACAACCGTGCGGG AACCATCGGCAGCAAGGGTGATGCCCGTATCAGCGTGACCAGCCTGGACAACGCCGAACAAGGCAGCCTGGTGAGTGAAGGCCGCCTGGAGCTTGTAGCC GACCAGGTGAGCAACGGCAACCAAGGCCGTATCGCCGCCAGAGGCGTGCTGGAGGCGGCGGTCGGTACGCTGCTCCAGCAAGGCGGCGAGCTGGTCAGCC AGGGGAGCCTGGACCTTCGCGCCGACATGCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAA CCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGC CTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGCGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGACGGCGGTC GGCTCGACAGCCAGAACGGCCTGAGCGTGAGCCTCGGCGGCGTGCTGGACAACCAGGGCGGCGCGCTGGTCAGCGAAGGCAGCCTGACGGCGCGCGCCGC GCGCCTGGACAACCGTGGCGGGACCTTCTCCAGCGCCGGTGCGCTGGCGCTGACCAGCCAGGCCGCGCTGGACAACCAGGGCGGCAGGCTGCTCAGCGAT GCCGGTGTGACGCTGAAGGGCGCCAGCCTCGACAACAGCCGTTCCGGTGTGATCAGCGCCAAGGGCGCGGTGGATATCCGCACCGGCGTGCTGGACAACA GCCGCAACGGCGGCATCGGCAGCAACGCCGGCATCACCCTGGTGGCCGCCCGGCTGGACAACGGCCAGCAGGGCCGGATCAGCGCCAAGGGCCTGCTCGA CGCCAACCTGAAAGGCCTCGACCAGCGCGGAGGCGGCGTCCTGGTCAGCGAAACCGGCGTCACCCTCGACCTCAATGGCGGCACGCTGGTCAACCGCGAC GGCGGCCTGATCGCCACGCCCGGCGCGCTGCTGCTGCGCCAGCTCGGCGCGGTGGACAACGGCGCCGGCGGGGAAATCTCCAGCGACCGCGCCTTCACCC TCGCCGCCGCCAGCCTGGACAACCGCGGCGGGCGCCTGATCGGCGCCGACAGCCTGACCCTGCGCATCGCCCAGGCCCTGGACAACAGCCTGGCCGGGGT GATCTCCGGCGCCGCCGGCCTGGACATCGCGGCCGCTCGCCTGGACAACAGCGCCAAGGGCACCCTGGCCAGTCGCGCCGGCATCGACCTGCGCGTCGAT GGCGCGCTGGACAACCACGCCGAAGGCACCGTCTCCGGCGCCCGCCTGACGCTCGCCAGCGCCTCGCTGGACAACAGCGGCAAGGGCCTGCTCTCCGGCA ACGCCGGCCTGAGCGTCGCCACTGGCGCGCTGGACAACGCCGAGGGTGGCCAGTTGATCAGTCAGGGCGTCCTGGACGTCAGCAGCGCCGACCTCGACAA CCGTGGCGGCGCCCTCAGTGGCAAGCAGTCGCTGCGCCTGAGCGCCGCCAACCTGGACAACCGTGGCGGCCTGCTCACCAGCGACGGCGAACTGGAACTG ACGGCAGGGCGCGTCGACTCCGCCGACGGCGGCGAAATCTCCGCCCGGGGCGACCTGCGCCTGACGGTCGAGCGCCTGGTGCAACGCCAGGGCCGGCTGA TCGGCGAGCGCGGCGTCAGTCTCGACCTGCGGGGCGGCGACCTGGACAACCAGGGCGGCCTGATCAGTGCCCGCGGCCCGCTGAGCATCGAGCGGCTGAA CGTCCTCGACAACCGCCAGGGCGGCGAGATTTCCAGCCAGCAGGGCTTCGAGCTGCTGGCCAGGCGCATCGACAACGGCCAGCAGGGGCGCATCATCAGC GCCGGGAAACTGCGCCTGGACGCCGACGCGCTGGGCAACGCCGGCGCCGGCCTGCTCTCCGGATGGCAGGGCCTGACGGTGACAGGCGGGAGCCTGGACA ACAGCGCCGGCGGCACCCTTTCGAGCAAGGACGGCGAGCTGGCCGTCAGCCTCGGCGGCGCGCTGGACAACCACGGCCAGGGCGCCCTGGTCAGCAAGGG CGCGCAACGGATCGACGCCGCCAGCCTGGATAACGCCCAGGGCATCGTCTCCGGCGAAAGCGACGTGACCCTGAGCATCGCCGGGAAGCTGGACAACGGC CAGGGCGGCCTGGTCTCG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCGCAGCGCGCGCTGAGCTTCGAGCGCGACGATACGCTGCTGAACAACGCCGGCGGCCGGATCAACGGCGGCAGCCTGCTGCTCAAGGGCGCCAGCCTGG ATAACAGCGACGGCCAGTTGATCAGCCAGGGCCGGCTCGACGCCATCCTCGGCGGCGCCCTGGTCAACACCGGCGCGGCGCGCCTGGCCAGCGGCGGCGA CCTGCTGCTGCGCAGCGCCAGCGTCGACAACCGCGGCGGCAAGCTGGTCAGCCAGGGGCTGCTGGAGATCAGCGCCGGCAGCCTCGACAACAGCGCCTCC GGCACCCTCGCCAGCCAGGCCGGCATGAGCCTGCGCCTGGGCGGCGGCGCCCTGCGCAACCAGCAGGACGGCCTGATCTTCAGCCAGGCCGGCGCCCTCG AGGTGCAGGCCGGCAGCCTGGACAACCGCCAGGGCACGCTCCAGGCCCAGGGCGACAACCAGCTGCGTATCGGTGGCGCGCTGGACAACCAGGGCGGCCG
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Amino Acid Sequence |
>hypothetical protein
QHSIDVILDGVLGNQAGSLSSQGRLSVKSGRLDNQGGAVSSAGTLSLSSQGALNNQGGRVVTDAGAVLRSASLDNSQGGIVSAKGAAEIRTGSLNNSQKG GIGSGAGLALVADLVDNSQNGRITAKGAIDANLKGLDQQGSGRLVSDTAIALDLRGGELVNRAQGLIATPGALLLRQLGVVDNSGGGEISSDRSFTLAAT ALSNRGGRVISGDSLTLRIAQALDNSLQGVLSASGGLDVAALVFDNHSGIVGSKGDTRIGVNRLENEAGRVVSEGALDLTAKQVSSAKGRIAAKGDLQVT VGTLEQQGGELASQGTLTLDADSLDNRNGGLVSADGGVTAEARQIDNRGGEISSVAKVALAVREQLDNRGGKVIGDSELSLTVQRLLNQAKGVLASRDGL HLDGAELLNGDGGLLSSQRLVDVTLSGALDNQGSGALVSEGSLTVKADQVNNQAGTFSSAGSLLVTSRGELNNQGGRLVTDAGATLNSTGFDNSRAGLVS AKGAVAIRTGALNNSQKGSIGGNAGVTLVAGLVDNGREGRISTKGTLDANLKGLLQQGGGSLVGERGVTLDLNGGTLDNHDLGLVSTPGALLLRQLGMVD NSVGGEISSDRAFTLAANTLNNQGGRLISSEALTLRIAKTLDNSLKGQVLATDGLAIESQVLDNRAGTIGSKGDARISVTSLDNAEQGSLVSEGRLELVA DQVSNGNQGRIAARGVLEAAVGTLLQQGGELVSQGSLDLRADMLDNSQSGLIAANGGIAIEARQVDNRAGEISSTSKVAVNAREQLDNRGGKVIGDSGLR LTVQRLLNQAKGVLAGRDGLSLDGGELFNGDGGRLDSQNGLSVSLGGVLDNQGGALVSEGSLTARAARLDNRGGTFSSAGALALTSQAALDNQGGRLLSD AGVTLKGASLDNSRSGVISAKGAVDIRTGVLDNSRNGGIGSNAGITLVAARLDNGQQGRISAKGLLDANLKGLDQRGGGVLVSETGVTLDLNGGTLVNRD GGLIATPGALLLRQLGAVDNGAGGEISSDRAFTLAAASLDNRGGRLIGADSLTLRIAQALDNSLAGVISGAAGLDIAAARLDNSAKGTLASRAGIDLRVD GALDNHAEGTVSGARLTLASASLDNSGKGLLSGNAGLSVATGALDNAEGGQLISQGVLDVSSADLDNRGGALSGKQSLRLSAANLDNRGGLLTSDGELEL TAGRVDSADGGEISARGDLRLTVERLVQRQGRLIGERGVSLDLRGGDLDNQGGLISARGPLSIERLNVLDNRQGGEISSQQGFELLARRIDNGQQGRIIS AGKLRLDADALGNAGAGLLSGWQGLTVTGGSLDNSAGGTLSSKDGELAVSLGGALDNHGQGALVSKGAQRIDAASLDNAQGIVSGESDVTLSIAGKLDNG QGGLVS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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