Pseudomonas aeruginosa LESB58, PALES_57671 (betA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa LESB58 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCGACCGTGTTCACCGATTGCCGCGACGACATGACCATCGTCCGCGAGGAAATCTTCGGCCCGGTGATGAGCATCCTGGTCTATGACGACGAAGACGA GGCGATCCGCCGCGCCAACGATACCGAGTACGGCCTCGCCGCCGGCGTCGTGACCCAGGACCTGGCCCGCGCCCACCGCGCCATCCATCGCCTGGAAGCC GGCATCTGCTGGATCAATACCTGGGGCGAGTCGCCGGCGGAAATGCCGGTCGGCGGTTACAAGCAATCCGGTGTCGGTCGCGAGAACGGTCTCACCACCC TGGCTCATTACACTCGCATCAAGTCCGTGCAAGTGGAGCTGGGCGACTACGCCTCGGTGTTCTGAGCCTCGACGCAGCGCTCGAACCCCTAACCAGGCCG GTCCCAGGCAACGCTCCCTGACACCGGCCATTCCGAACTTCCAGACACCGGCGCGCCAGCGTCGCGGCCGGTGTCATGCCGAGAAAAGAGGAAGGCCTGC
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| DNA Sequence for Gene |
>PALES_57671
|betA
ATGTCCCAGGAATTCGACTACATCATCATCGGAGCCGGCTCTGCCGGTAACGTACTCGCTACCCGCCTCACCGAAGATGCCGACGTCAGCGTCCTGCTGC TCGAAGCCGGCGGTCCTGACTACCGCTTCGACTTCCGCACCCAGATGCCGGCGGCCCTTGCCTTCCCGCTGCAGGGGCGGCGCTACAACTGGGCCTACGA GACCGACCCCGAGCCCTACATGAACAACCGCCGCATGGAGTGCGGTCGCGGCAAGGGCCTGGGCGGCTCCTCGCTGATCAACGGCATGTGCTACATCCGC GGCAACGCCCTGGACTTCGACGGCTGGGCCAAGGAGCCGGGCCTCGAGGACTGGAGCTACCTCGACTGCCTGCCGTACTTCCGCAAGGCGGAAACCCGGG ACATCGGCCCCAACGACTACCATGGCGGCGACGGCCCGGTCAGCGTGACCACGCCGAAGGCCGGCAACAACCCACTGTTCCATGCGATGGTCGAGGCCGG CGTGCAGGCCGGCTACCCGCGAACCGATGACCTCAACGGCTACCAGCAGGAAGGCTTCGGCCCCATGGACCGGACCGTCACCCCGGAGGGCCGTCGCGCC GCCACCGGGCGCGGCTACCTGGACCAGGCCCGCGGCCGGCCCAACCTGACCATCGTCACCCACGCCCTGAGCGACCGCATCCTGTTCAGCGGCAAGCGCG CCATCGGCGTCTCCTACCTGGTGGGCAACGGCGACAACCCGGTCACCGCCCACGCCCGCCGCGAAGTATTGGTGTGCAGCGGCGCGATCGCCTCGCCGCA ATTGCTGCAACGCTCCGGCGTCGGCCCGGCGGCCCTGCTGCGCGACCTGGACATCCCGGTGGTGCATGACCTGCCGGGCGTCGGCGCCAACCTGCAGGAT CACCTGGAACTCTACCTGCAATACGCCTGCAAGCAACCGGTGTCGATCTACCCGGCGACCAAATGGTGGAACCAGCCTGCCATCGGTGCCCAGTGGCTGT TCCTCGGCAAGGGCCTCGGCGCCAGCAACCAGTTCGAGGCTGGCGGCTTCATCCGAACCCGCGAAGCGTTCGAATGGCCGAACATCCAGTTCCATTTCCT CCCGGTGGCGATCAACTACAACGGCAGCAAGGGCGTGCAGGAGCACGGCTTCCAGGCGCACATGGGCTCGATGCGCTCGCCGAGCCGCGGGCGCATCCAC CTGAAGTCCAGGGACCCGCGCCAGCATCCGAGCATCCTGTTCAACTACATGTCCCACGAGCAGGACTGGCAGGAGTTCCGCGACGGCATCCGGCTGACCC GCGAGATCATGAACCAGCCGGCGCTGGACCCCTATCGGGGCCGCGAGTTGAGCCCTGGGGTGAGCGTGCAGTCGGACGCCGAACTCGACGAGTTCATCCG CAACCATGCTGAGACCGCTTTCCACCCATCCTGCTCGTGCAAGATGGGCAGCGACGACATGGCGGTGGTCGATGGCCAGGGACGGGTCCATGGCATGGAA GGACTGCGAGTGGTGGATGCGTCGATCATGCCGCTGATCATCACCGGCAACCTCAATGCCACCACCATCATGATGGCCGAGAAGATCGCCGACAGGATCC GCGGTCGCCAGCCGCTGCCGCGCAGCACGGCGAAGTACTACGTGGCCGGGGATGCGCCGGTACGCGGCAACCCCGTGCGGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAACGCGCAAACAAGAACGCCGGCGATAGCCGGCGTTCCTGCGTCTAGCCCCGGCGTGGCGGGACCGGGCGGGTGCGCCCGCTGCCATCGATGGCGACG AACACGAACACCGCCTCGGTGACTTTGCGCCATTCGCTGGACAGCGGGTCGTCGCTCCACACCTCGACCAGCATGCGGATCGAGCTGCGGCCGACTTCCA GGGTCTGGGTATAGAAGGAAAGCTGGGCACCTACCGCGACCGGCACCATGAAGGCCATGCGGTCGATGGCGACGGTGGCGATACGGCCGCCGGCGATCTT GCTGGCCATGGCGGTTCCCGCCAGGTCCATCTGGGATACCAGCCAACCGCCGTAGATATCGCCGAAACCGTTGGTTTCGCGCGGCAGCGCGGTAATCTGC AAGGCCAGGTCTCCCTGGGGAATGGGGTCTTCTTGTTCAAGCTCGATCATAGGTAAGGGCCTCGTGCCCCCCGGATTTCTTGTTCAAGCGCGGTTTAGGG
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| Amino Acid Sequence |
>choline dehydrogenase
MSQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYETDPEPYMNNRRMECGRGKGLGGSSLINGMCYIR GNALDFDGWAKEPGLEDWSYLDCLPYFRKAETRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPEGRRA ATGRGYLDQARGRPNLTIVTHALSDRILFSGKRAIGVSYLVGNGDNPVTAHARREVLVCSGAIASPQLLQRSGVGPAALLRDLDIPVVHDLPGVGANLQD HLELYLQYACKQPVSIYPATKWWNQPAIGAQWLFLGKGLGASNQFEAGGFIRTREAFEWPNIQFHFLPVAINYNGSKGVQEHGFQAHMGSMRSPSRGRIH LKSRDPRQHPSILFNYMSHEQDWQEFRDGIRLTREIMNQPALDPYRGRELSPGVSVQSDAELDEFIRNHAETAFHPSCSCKMGSDDMAVVDGQGRVHGME GLRVVDASIMPLIITGNLNATTIMMAEKIADRIRGRQPLPRSTAKYYVAGDAPVRGNPVRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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