Pseudomonas aeruginosa LESB58, PALES_48811 (opdD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa LESB58
GCF_000026645.1|latest |
| Locus Tag |
PALES_48811
|
| Name |
opdD
|
| Replicon | chromosome |
| Genomic location | 5372599 - 5374053 (+ strand) |
Cross-References
| RefSeq | YP_002442462 |
| GI | 218893593 |
| Entrez | 7178794 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
Glycine-glutamate dipeptide porin OpdP
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -6.35 |
| Kyte-Doolittle Hydrophobicity Value | -0.484 |
| Molecular Weight (kDa) | 53.1 |
| Isoelectric Point (pI) | 5.98 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 3SYB | MEMBRANE PROTEIN | 07/16/11 | Crystal structure of Pseudomonas aeruginosa OccD3 (OpdP) | Pseudomonas aeruginosa | 2.7 | X-RAY DIFFRACTION | 97.6 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 16 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG004088 (487 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PALES_48811
Search term: opdD
Search term: Glycine-glutamate dipeptide porin OpdP
|
Human Homologs
References
No references are associated with this feature.