Pseudomonas aeruginosa LESB58, PALES_47891 (ddl)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008716 D-alanine-D-alanine ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01205
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01205
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01205
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other LESB58 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Peptideglycan biosynthesis ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01205 JCVI: D-alanine--D-alanine ligase IPR005905 D-alanine--D-alanine ligase 20 313 2.0E-108
Pfam PF01820 D-ala D-ala ligase N-terminus IPR011127 D-alanine--D-alanine ligase, N-terminal domain 20 102 9.5E-19
Gene3D G3DSA:3.40.50.20 - - - 8 100 1.3E-28
Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. IPR005905 D-alanine--D-alanine ligase 19 315 34.840561
FunFam G3DSA:3.40.50.20:FF:000013 D-alanine--D-alanine ligase - - 16 100 9.0E-34
SUPERFAMILY SSF56059 Glutathione synthetase ATP-binding domain-like - - 113 312 8.84E-58
PIRSF PIRSF039102 Ddl/VanB IPR005905 D-alanine--D-alanine ligase 17 65 6.5E-8
Gene3D G3DSA:3.30.470.20 - - - 101 314 3.7E-50
FunFam G3DSA:3.30.1490.20:FF:000007 D-alanine--D-alanine ligase - - 127 192 2.8E-20
PANTHER PTHR23132 D-ALANINE--D-ALANINE LIGASE - - 67 316 5.8E-68
FunFam G3DSA:3.30.470.20:FF:000008 D-alanine--D-alanine ligase - - 157 311 7.1E-41
Pfam PF07478 D-ala D-ala ligase C-terminus IPR011095 D-alanine--D-alanine ligase, C-terminal 120 311 8.9E-57
Gene3D G3DSA:3.30.1490.20 - IPR013815 ATP-grasp fold, subdomain 1 128 192 2.1E-25
SUPERFAMILY SSF52440 PreATP-grasp domain IPR016185 Pre-ATP-grasp domain superfamily 20 112 9.21E-30
PIRSF PIRSF039102 Ddl/VanB IPR005905 D-alanine--D-alanine ligase 59 318 2.4E-82

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.