Pseudomonas aeruginosa Pae_CF67.11p, ACO98_RS05680
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Pae_CF67.11p CF67.11p_contig_4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGCTGGCCGAGCAGATCGGCCGCCGCCCGCCGAGCATCGATACCTCTGGCCTGCTTCCGCGCGGCGCGCTGGCTGGCTGAATTCCCCTCGACCTGGAG CACTCCCATGGAACCGACCCGTATCGCCACCAACGACCGCCTGTCCGCCGCGGTCTGCTTCGACGCCCTGGTATTTCTTTCCGGCCAGGTGCCGGGCCAG GCCGAGGATATCCATGGCCAGACCCGCGAGGTGCTGGCGAAGATCGACGCGCTGCTGGCCGAGGCCGGGTCGCGCAAGGAGCGTATCCTCAGCGCGACCA TCTACCTGAAGGACATCGCCCGCGATTTCGCCGCCCTGAACGAGGTCTGGACCCAGTGGTTGCCGACCGGCCAGGCACCCAGCCGGACCACCGTCCAGGC GGAGCTGGCGCGTCCGTCGGTGCTGGTGGAGATCACCGTGGTGGCGGCCAGGGGCTGACTTACTTTCCATAGCCATAAGAAAAAAGAGGCAGAACCTCCG
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| DNA Sequence for Gene |
>ACO98_RS05680
ATGAAAACCCTTGTATCCAGCACCCTCGCACTCTCCCTGTCGCTCGCCATCGGCGCCGCGCAGGCCGAGGAACTCAGCGGCACCCTGAAGAAGGTTGCCG ACAACGGCACGATAACCCTGGGTTATCGCGATGCCTCGGTGCCTTTCTCCTACCTTGGCGATAACAGCGGCCAGCCCATGGGCTATTCGGTGGAACTGGC CGACAAGGTGGTGGAGCGGCTCAAAAGCACCCTCGGCAAGCCGGAACTCAAGGTGAAGTACAACCTGGTCACTTCGCAGACCCGTATCCCTCTGGTGCAG AATGGCACCGTCGACCTGGAGTGCGGCTCCACCGGGGTCACCGCCGAGCGGCAGAAACAGGTGGCGTTCTCCTACGGCTTCATCTACGTCAAGGGCCAGT TGCTGACCCGCAAGGACAGCGGCATCGCCCACTTCGACGACCTCAAGGGCAAGAACGTGGTGACCACCGCCGGCACCACCAACGAGCGCTACCTGAAGAA CTACAACGCCGAACACAAGCTGGGGATGAACGTGGTCAGCGCCAAGGACCACGGCGAAGCCTTCCAGATGCTGCAATCGGGTCGCGCGGTGGCCTTCTAC ATGGACGATGCGCTGCTCTACGGCGAACGCGCCAAGGCGCGCCAGCCGCACGACTGGGTGGTGGTCGGCGAGCCGCAATCGCGGGAGATCTACAGCTGCA TGGTGCGCAAGGACGACCCGCAGTTCCTTGCCCTGGTCAACGAGACCCTGGCCGGGCTGTATCGCTCGGGCGAGATACAGGGCATCTACCAGCGCTGGTT CCAGCAGCCGATCCCGCCCAAGGGGTTGAACCTGGAGTTTCCCATGACCGCGGAGCTGAAGGCGATCCTCGAGAACCCCACCAGCGATCCGGTGCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTCTAGCGCTGCAGGCCGAGGTGGCGGATCGACGGCGTCGGCGCGTCCAGGCGCGACCAGACGTCGTCGGCCAGTTCGGCCGGATAGAACGACGGCAG GCCAGGCAGTTCGTCGCGGGCGATCCAGCCGACCTCGCGGATATCGAACTCGTCGCCGCCCAGGCCCTTCAGGTTGGCCAGGGTCGGCTCGCCACGCCAG GCGTCGATGCGGTAGAACAGCTCCATGTGGAAGCGCCCGGCGGCGGGTTCGGCGAATTCGCGCACGTAGACCAGCGGGCCGACGTCCACCCGCAGGCCGG TCTCCTCGAAAAACTCGCGCCGGACGGTATCCTTCGTCGATTCGTCGCATTCCGACTCGAAGCCGCCGCCGGGCGGAATCCAGTAGATGTCGCCGCCGAC CTCGTGGCGGACCAGCAGGATGCGTTGCTCCACCACCAGCAGGCCGGCGGCGCGGATACGGTGTCGCAAGGCCTCGGCCATGCTCGTTCTCCCGGCGCCA
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| Amino Acid Sequence |
>ABC transporter
MKTLVSSTLALSLSLAIGAAQAEELSGTLKKVADNGTITLGYRDASVPFSYLGDNSGQPMGYSVELADKVVERLKSTLGKPELKVKYNLVTSQTRIPLVQ NGTVDLECGSTGVTAERQKQVAFSYGFIYVKGQLLTRKDSGIAHFDDLKGKNVVTTAGTTNERYLKNYNAEHKLGMNVVSAKDHGEAFQMLQSGRAVAFY MDDALLYGERAKARQPHDWVVVGEPQSREIYSCMVRKDDPQFLALVNETLAGLYRSGEIQGIYQRWFQQPIPPKGLNLEFPMTAELKAILENPTSDPVQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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