Pseudomonas aeruginosa LESB58, PALES_31891 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other LESB58 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd07906 Adenylation_DNA_ligase_LigD_LigC - - 217 400 1.03134E-79
MobiDBLite mobidb-lite consensus disorder prediction - - 186 212 -
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 224 399 1.9E-22
MobiDBLite mobidb-lite consensus disorder prediction - - 8 32 -
NCBIfam TIGR02776 JCVI: DNA ligase D IPR014143 DNA ligase D 228 823 0.0
Gene3D G3DSA:3.90.920.10 DNA primase, PRIM domain - - 556 840 5.7E-92
NCBIfam TIGR02779 JCVI: non-homologous end-joining DNA ligase, ligase domain IPR014146 DNA ligase D, ligase domain 219 521 2.2E-110
MobiDBLite mobidb-lite consensus disorder prediction - - 514 546 -
Pfam PF13298 DNA polymerase Ligase (LigD) IPR014144 DNA ligase D, 3'-phosphoesterase domain 40 144 1.3E-38
NCBIfam TIGR02777 JCVI: DNA ligase D, 3'-phosphoesterase domain IPR014144 DNA ligase D, 3'-phosphoesterase domain 7 162 6.9E-70
Gene3D G3DSA:3.30.1490.70 - - - 229 397 1.2E-46
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 216 399 2.3E-45
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 403 523 3.98E-28
NCBIfam TIGR02778 JCVI: non-homologous end-joining DNA ligase, polymerase domain IPR014145 DNA ligase D, polymerase domain 549 793 1.6E-88
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 241 356 1.2E-46
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 402 523 8.1E-37
PANTHER PTHR42705 BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD - - 228 836 6.3E-111
CDD cd07971 OBF_DNA_ligase_LigD - - 403 520 3.04293E-49
CDD cd04862 PaeLigD_Pol_like IPR033651 LigD polymerase domain, PaeLigD-type 566 792 8.80959E-126
MobiDBLite mobidb-lite consensus disorder prediction - - 1 32 -
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 418 515 1.2E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.