Pseudomonas aeruginosa LESB58, PALES_15351 (rhlR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0046889 positive regulation of lipid biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3477
 ECO:0000249
sequence similarity evidence used in automatic assertion		 8144472
Biological Process GO:0045862 positive regulation of proteolysis
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3477
 ECO:0000249
sequence similarity evidence used in automatic assertion		 8522523
Biological Process GO:1900378 positive regulation of secondary metabolite biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3477
 ECO:0000249
sequence similarity evidence used in automatic assertion		 8522523
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46894
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06170
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other LESB58 genes in this class
Transcriptional regulators Other LESB58 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06170 LuxR_C_like IPR000792 Transcription regulator LuxR, C-terminal 181 229 2.72453E-18
SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators IPR016032 Signal transduction response regulator, C-terminal effector 171 241 3.74E-18
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 195 211 2.1E-11
PANTHER PTHR44688 - - - 29 240 2.3E-19
SUPERFAMILY SSF75516 Pheromone-binding domain of LuxR-like quorum-sensing transcription factors IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 9 172 3.79E-39
SMART SM00421 luxrmega5 IPR000792 Transcription regulator LuxR, C-terminal 178 235 8.9E-20
Gene3D G3DSA:3.30.450.80 - IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily 3 177 7.9E-47
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 211 223 2.1E-11
PRINTS PR00038 LuxR bacterial regulatory protein HTH signature IPR000792 Transcription regulator LuxR, C-terminal 181 195 2.1E-11
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 180 241 4.2E-20
Pfam PF00196 Bacterial regulatory proteins, luxR family IPR000792 Transcription regulator LuxR, C-terminal 181 235 2.0E-19
FunFam G3DSA:1.10.10.10:FF:000297 DNA-binding transcriptional activator SdiA - - 178 241 3.8E-35
Pfam PF03472 Autoinducer binding domain IPR005143 Transcription factor LuxR-like, autoinducer-binding domain 26 164 8.3E-36

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.