Pseudomonas aeruginosa LESB58, PALES_14911 (alg44)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0042121 alginic acid biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3542
 ECO:0000249
sequence similarity evidence used in automatic assertion		 18524915
Molecular Function GO:0004467 long-chain fatty acid-CoA ligase activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3542
 ECO:0000249
sequence similarity evidence used in automatic assertion		 16797016
Biological Process GO:0042121 alginic acid biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3542
 ECO:0000249
sequence similarity evidence used in automatic assertion		 16797016
Cellular Component GO:0009276 Gram-negative-bacterium-type cell wall
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3542
 ECO:0000249
sequence similarity evidence used in automatic assertion		 16797016
Biological Process GO:0042710 biofilm formation
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3542
 ECO:0000249
sequence similarity evidence used in automatic assertion		 16797016
Molecular Function GO:0035438 cyclic-di-GMP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07238
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other LESB58 genes in this class
Cell wall / LPS / capsule Other LESB58 genes in this class
Adaptation, Protection Other LESB58 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Alginate biosynthesis ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13437 HlyD family secretion protein - - 262 357 1.0E-9
Gene3D G3DSA:2.40.10.220 predicted glycosyltransferase like domains - - 12 122 1.5E-35
Pfam PF07238 PilZ domain IPR009875 PilZ domain 16 115 2.2E-11
SUPERFAMILY SSF141371 PilZ domain-like - - 10 124 2.35E-10
PANTHER PTHR30386 MEMBRANE FUSION SUBUNIT OF EMRAB-TOLC MULTIDRUG EFFLUX PUMP - - 259 370 2.5E-19
Gene3D G3DSA:2.40.50.100 - - - 198 292 3.9E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.