Pseudomonas aeruginosa LESB58, PALES_10291 (rocR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa LESB58 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAGTCCCAGGGACTTGATCCGCGAGATCACGGTCAGGCCATCGAGTTTGGGAATGCCGATGTCGAGAATCACCACGTCCGGTTCGTGCTCCCGGACCAAC TGGATGGCATCCACGCCATTGTCCGTCTCGGCGACCACCTGCAGACCATGCTTTTCCAGCAGGACGCGCACGGCGAGACGGATGACGGGGTGGTCGTCGA CGATCAGGACGGTATGCATAAATTCGATTTACCTTGAGGGACCGGGACAGGGTCGGGATTCGATTTCCCGGGCGCTGCCGCCGGTGGTCATCCATGTTGG GCGCTAGGCCGAGATCGCCGTCCAGAATAGCCTGTTAAGGCGGGGCGACTCGGTTTTTCATGTGGAACCATGCTAATCCAACCGAACCTCCAAATCAGTA GGAAAATTCCCACAAAACATGGGGACTTGTCCCATAGGTCTAGTAAGGGAAACACAGCAGTATATCGCCGGTATTTCCTGGAAACCCTGTGTGGACCGTG
|
|
| DNA Sequence for Gene |
>PALES_10291
|rocR
ATGAATGATTTGAATGTTCTGGTGTTGGAGGATGAGCCTTTTCAGCGCCTGGTAGCCGTCACAGCCCTGAAGAAAGTGGTGCCCGGATCGATCCTCGAGG CGGCGGACGGCAAGGAGGCGGTGGCGATCCTGGAGTCCTGCGGACACGTCGACATCGCCATCTGCGACCTGCAGATGAGCGGCATGGACGGCCTGGCGTT CCTTCGCCACGCAAGCCTGAGCGGCAAGGTCCATTCGGTGATCCTCAGCAGCGAGGTGGATCCCATCCTGCGCCAGGCCACCATTTCGATGATCGAGTGC CTGGGCCTCAATTTTCTCGGCGACCTCGGCAAGCCATTCAGCCTGGAGCGGATCACCGCCCTGTTGACCCGCTACAACGCTCGTCGCCAGGACCTGCCGC GACAGATCGAAGTCGCCGAGCTGCCCTCCGTGGCGGACGTGGTGCGCGGCCTCGACAACGGCGAGTTCGAAGCCTACTACCAGCCCAAGGTGGCCCTGGA TGGCGGCGGCCTGATCGGCGCCGAGGTCCTGGCACGCTGGAACCACCCGCATCTCGGCGTATTGCCGCCGTCGCATTTCCTCTATGTGATGGAAACCTAC AACCTGGTCGACAAGCTGTTCTGGCAACTGTTCAGCCAGGGGCTGGCGACGCGCAGGAAGCTGGCGCAGTTGGGGCAGCCGATCAACCTGGCGTTCAACG TCCATCCTTCGCAACTGGGTTCGCGTGCCCTGGCCGAGAACATCTCGGCGTTGCTGACCGAGTTCCACCTGCCGCCCAGTTCGGTGATGTTCGAGATCAC CGAGACCGGGTTGATCAGCGCTCCTGCCAGCAGCCTGGAGAACCTCGTGCGTCTGCGGATCATGGGCTGCGGCCTGGCGATGGACGATTTCGGCGCCGGC TATTCGTCCCTCGACCGGCTCTGCGAGTTTCCCTTCAGCCAGATCAAGCTGGACAGAACCTTCGTCCAGAAGATGAAGACCCAGCCCAGGAGTTGCGCCG TCATCAGCAGTGTCGTGGCGTTGGCGCAGGCGCTGGGAATTTCCCTGGTGGTGGAAGGGGTGGAGAGCGACGAACAACGGGTACGCCTGATCGAACTCGG TTGCTCCATAGCCCAGGGCTACCTGTTCGCCCGGCCGATGCCGGAACAGCACTTTCTCGACTATTGCTCCGGATCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCCGCCGCCCTGGCCTCGGCTGCCTCTAGCCGAACGCCGGGCCTCGCGCCGGACGCGTTTCCTTTCCATACAACTGCCGGCCCTGCCGCACAGACCTTT CATGCGATCAAAACTATTCCTGCTGTTCTTCTGCCTGCTGCTGTCGGGCGGACGCCTGTTCGCCGTCGAAGCGCATCCGTCCCTGACGCTGTTCAGCCAG TTGCGCATCGAGCACGAGGACATGGCGATCGCCGAGGACGACTGGGCCTGGCTGCGTCACAAGGGTCACCTGAGGCTCGGCGCGGCGCTGGACGAGACCT CGCCCTTCAACGTCCGGCTCGACGACGAGAACTACGAAGGCATAACGGCGGACGTCGCCACGCTGGTCGGGCAGTTGCTCGGCATGCGCATCAAGGTCGT GAGCTTCGATACCCATGCGGATGCCGTGGCGGCGCTCGCTGCCGGAAAGATCGACCTGCTTGGCAGCCATTACAGCTCGGCGGGTGATTCCTCCCTGGTG
|
|
| Amino Acid Sequence |
>RocR
MNDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVILSSEVDPILRQATISMIEC LGLNFLGDLGKPFSLERITALLTRYNARRQDLPRQIEVAELPSVADVVRGLDNGEFEAYYQPKVALDGGGLIGAEVLARWNHPHLGVLPPSHFLYVMETY NLVDKLFWQLFSQGLATRRKLAQLGQPINLAFNVHPSQLGSRALAENISALLTEFHLPPSSVMFEITETGLISAPASSLENLVRLRIMGCGLAMDDFGAG YSSLDRLCEFPFSQIKLDRTFVQKMKTQPRSCAVISSVVALAQALGISLVVEGVESDEQRVRLIELGCSIAQGYLFARPMPEQHFLDYCSGS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|