Pseudomonas aeruginosa isolate RN21, PARN21_RS33075
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGCCCAGCACAGCAACGGCCTGCTCAGCCGCTGGCGGCCGACCCTGCTGGAAGATCATCCGTTGCCCGGTCCGCCGGGACGCGGCGCGATCTTCGTGC GCTTTGGCGAAGGCGCCGACGCGCTGGTGGTAGTGATGATGCATCTCGCTCTCGGCGCTCGCACCCGCACCCGCCAGCTCGCCTATATCCGCGAGCTGAT CGGCGACTACCGCCACCAGGTGCTGATGGGCGACATGAACACCCACGCCGTCGATCTTCTGGAAAACTCGCCCCTGCGCGACCTCGGCCTGATGGCGCCG CAGGTCGAGGCGACGTTTCCCAGCTGGCGGCCGCAGCGCAATCTCGATCACATCCTGCTCAGTTCCGATCTCGCTCTCGAGCGGGTCGACGTGCTCGACC AGCCGATCTCCGACCATCTGCCGGTATCGGTGGAGATTCGCCTGCCGGACAACCTGCGCGACAAGGCCTTGGTCGTGCGCGGGGATGCCGGGAGTCCGCC
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| DNA Sequence for Gene |
>PARN21_RS33075
ATGAGTCGCGACGACGTCCAGCGCTGGAAAGACAAGTACCTGGAGAACATCGAGCAGCAGGAGCGCCTGCAACGGCGCTGGGATGCCCGGATCGACCTGC TGCGTCGCGGCCTGGTGCGTAGCAGTCTGGCGGCCGAAGGCAGCGACAAGGCGGTCGACCAGTGCATGAAGGAGCTGCGCGAGATCCTCCGTCGCGACGA CATGGACGCCGGCCTGTCGGGCCTGATTCCGCGCCTGGAAAAGGCCGTGCTCGACTCCGAACAGCGCCGCCAGCAACGCACCCAGCAGAACATCGATGCT CTCGGCGAACTGGCCCAGCAGTTGCTGGCCCTGGACCTGCCGCGGGAACTGCGCAAGCCGCTGAAGCAGTTCGCCCGCGATATCGAGGAGCGCGCCCGGC AGTCGCGCGAGATTCCGATCCTGCTCAGCGAGCTGAGCAGGCTGCAACGCCAGGCGCTGGCCGAGCGCAAGGGCGGCGATGCCGAAGACGGTCGCCCGAG CCTGTTGCAACGCCTGTTCGGCGGCAAGGAGTCGGAAACCGCCGCGGAGCCGAGCGCATCGGTGCCGTCCGTTGTGGCGGCAAGCAATACACCGATCCAA CCGGCGGCGGCCGCGCCGTCCCTGCCGGTCGCCGAGCACGACGAGGCGCCAGGCGGTCCGCCGCAGCCGTTGCCCGCCCGCACGGTCGCCGCCATCGAAA GCGCGCCAGCGGGTTGGGTCGGGGTCGCCGAGCGTGGCGAGCCGAACCAGATCCTGCTGGATGAGCCCCGGGAAATCTGGCTCGACAGCCTGCCGCTACC GGCCGGCCTGAGCTTTAGCGAGACGCTGGAAGAAGCGGGTGCGGAGCCGTCGCCCGCAATGCCGGCGGACGTTGAAAGCGCGCCCGAAGCTCCGGCCACT CCTGTGGATAACCTCGACGGGCAGGCGGTAGACGAGGCCTACGAACTGCCGCCGCCGATACCGGAGCCCGGCTACAGCGCGGTGGCGCCGCACATCGAGG CCAGCCTGCTGCGGCTGCTCGACGGCCTGTCCCTGCCGAGCAGCCACCAGCCCCAGGCCGAGGCGCTGCGGGAGCGGATCGATGGCAGCCTGAACTGGTA TGAGCTGGTGCCGGTACTCGACGACCTGGCGGTGCTGGTGCTGTCCCTGGCGGACAGTGGCCAGCGCGACTTCGAGGAATACCTGCGGCAACTCAACGAG CGCCTGGAAAGCTTCCTCGGCCACCTGGGCGACGCCCACGCCGGCTATACCGACGTGCTGGACAACGCGCGCGGCTTTGACCAATCGCTGCGTGAGCAGG TCAGTGGCCTGCAGGCCAGCGTGCAGCAGGCGACCGACCTGAACAGCCTCAAGCTGGCGGTGGACAGCCGGCTGAACGGCCTGCTTGCCTCCATGGACGA ACACCAGCGCGAACAGGCCGAGCACGAACAGGAGGTGTCCGGCCGCCTGCAGGCGCTGATGGAGCGGGTCAACAGCATGGAGCAGGATGCCAAGGCGTTC CACAGCCACCTGGAGGACCAGCGACAGAAAGCCCTGACCGATCCGCTGACCGGCCTGCCCAACCGCGCGGCGCTCAGCGAGCGCCTGGAACAGGAAGTGG CGCGCCGGCACCGGGACGGCGCCGATCTGCTGCTGGCGGTGCTGGACATCGACCACTTCAAGCGGATCAACGACGACTTCGGCCACCTGGCCGGGGACAA GGTGCTGAAGATCATTGCCGGCGAATTGCGCAAACGGTTGCGCCAGGCCGATTTCATCGCCCGTTTTGGCGGCGAGGAGTTCGTCGTCCTGCTCCCGGCC ACGTCCCTGGAAGCCGGCCGGCAACTGCTCGAACGGCTGCGCGCGGCGATCGCCGCCTGTCCGTTCCATTTCAAGGGCGAGCCCCTGAGCATCACCTGTT CCGCCGGCATCACCGCGTTCGAAGGCAACGAGGCCGGCGAAGCGGTTTTCGAGCGTGCCGACCAGGCGCTGTATCGAGCCAAGCGCGCCGGCCGGGACCG CCTGGAAGTGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGGCGACCAGCGCACATTCCGACGACTCGGGACGGGCTCGCCTGCAGGTGTTGCCGCGGCTCGCTAGAATGGTCCCGCCCGGTAGAATGACCGGCTGTC CCGCTCTGGAAACTCCCATGGATATGTTCGGCGTCGCCGTCCTGATCTTTCTGGTCACCGACCCGTTCGGCAACATCGCCGTGTTCCTCGCCGCGCTGAA AGGCGTCGCACCTGGGCGCCGCCTGCGCGTGGCGTTTCGCGAGCTGGCTTTCGCCCTGGGCCTGCTGCTGCTCTTCCTCACCCTCGGCGAGCACATCCTC AGCGGCCTCGGCCTGTCCCGCGAGGCGACCGGGATCGCGGGAGGCATCATCCTGTTCGTGATCGCCATGCGCCTGATCTTCCCGTCGCCCCAAGGGCTGC TCGGCGAAGTGCCCGACGGCGAGCCGCTGCTGGTACCCCTGGCCACCCCGGCGGTGGCCGGGCCCTCGGCGCTGGCGATGCTGATCACCCTGCGCACCAC
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| Amino Acid Sequence |
>diguanylate cyclase
MSRDDVQRWKDKYLENIEQQERLQRRWDARIDLLRRGLVRSSLAAEGSDKAVDQCMKELREILRRDDMDAGLSGLIPRLEKAVLDSEQRRQQRTQQNIDA LGELAQQLLALDLPRELRKPLKQFARDIEERARQSREIPILLSELSRLQRQALAERKGGDAEDGRPSLLQRLFGGKESETAAEPSASVPSVVAASNTPIQ PAAAAPSLPVAEHDEAPGGPPQPLPARTVAAIESAPAGWVGVAERGEPNQILLDEPREIWLDSLPLPAGLSFSETLEEAGAEPSPAMPADVESAPEAPAT PVDNLDGQAVDEAYELPPPIPEPGYSAVAPHIEASLLRLLDGLSLPSSHQPQAEALRERIDGSLNWYELVPVLDDLAVLVLSLADSGQRDFEEYLRQLNE RLESFLGHLGDAHAGYTDVLDNARGFDQSLREQVSGLQASVQQATDLNSLKLAVDSRLNGLLASMDEHQREQAEHEQEVSGRLQALMERVNSMEQDAKAF HSHLEDQRQKALTDPLTGLPNRAALSERLEQEVARRHRDGADLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGEEFVVLLPA TSLEAGRQLLERLRAAIAACPFHFKGEPLSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRLEVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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