Pseudomonas aeruginosa isolate RN21, PARN21_RS20980
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGACCATGTTCGTCATGGCCCCGGTGTTCGACAAGATCAACAGCCAGGCCCTGCAGCCCTACCTGAACGAGCAGATTCCCGCCCAGGAAGCCCTGCAAA AGGCCGAGGTACCGCTGAAGGCGTTCATGCTGGCGCAGACTCGCACCTCCGACCTGGAGCTGTTCGTGCGCCTGTCCAAGCGCACCGACATCGGCAGCCC GGAGGCGACGCCGCTGACCATCCTGGTCCCGGCCTTCGTCACGTCCGAGCTGAAGACCGCGTTCCAGATCGGCTTCATGATCTTCATCCCGTTCCTGATC ATCGACCTGGTGGTGTCCAGCGTGCTGATGGCGATGGGCATGATGATGCTGTCGCCGCTGATCATTTCCCTGCCGTTCAAGATCATGCTGTTCGTCCTGG TGGATGGCTGGGCGCTGATCATCGGGACGCTGGCGGGCAGTTTCGGCACCGTCTAGCGGTGCCGCCGGCTTGACGCGCCGCTGGCGCGCTGGAGAGAGAC
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| DNA Sequence for Gene |
>PARN21_RS20980
ATGACCCCTGAGGTGGCACTCGACCTGTTCCGCGAGGCGTTGTGGCTGACGGCGATGATCGTCGGCGTGCTGGTGGTTCCGAGCCTGCTGGTCGGTCTCG TGGTGGCGATGTTCCAGGCCGCCACCCAGATCAACGAACAGACCCTGAGCTTCCTGCCGCGCCTGATGGTGATCCTGCTCACCCTGATCGTGCTGGGCCC CTGGCTGCTGCGGCAGCTGATGGAGTACACCCAGACGCTGATCGGCAACATCCCGCTGCTGATCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCTGGAGCTGACCAACGCGCAGATCGGCGGCTGGATCGCCAGCTTCGTGCTGCCGCTGTTCCGGGTCGCGGCGCTGCTGATGACCATGCCGGTGATTGG CACCCAGCTGGTGCCGGTGCGGGTGCGACTGTACCTGGCGCTGGGCGTCTGCGTGGTGCTGGTGCCGAACCTGCCGCCGATGCCGCAGGTGGACGCGCTG AGCATGAAGGCCATGCTGCTGATCGGCGAGCAGATCCTGGTCGGCGCCTTGCTCGGCTTTTCCCTGCAGTTGCTGTTCCACGCCTTCGTGATCGCCGGGC AGATCATCTCGATGCAGATGGGCCTGGGCTTCGCTTCCATGGTTGACCCGGCCAACGGCGTCTCGGTGCCGGTGCTCGGCCAGTTCTTCACCATGCTGGT GACGCTGCTGTTCCTGGCGATGAACGGACACCTGGTAGTGTTCGAGGTAATCGCCGAGAGCTTCGTCACCCTGCCGGTGGGCGAGGGCCTGAGCGGCAAC
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| Amino Acid Sequence |
>flagellar biosynthesis protein FliQ
MTPEVALDLFREALWLTAMIVGVLVVPSLLVGLVVAMFQAATQINEQTLSFLPRLMVILLTLIVLGPWLLRQLMEYTQTLIGNIPLLIG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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