Pseudomonas aeruginosa UM-01, AAY82_RS16925
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain UM-01, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCAGCCATAGTCCGCCGGATAGATGTCGCTGGTCAGGCGTTCCTCGTAGCCGTGCAACTGGTCGGGACCGCAGAAGTGCATCTTGCCCGACAGCGCCGT GCGATAGCCGAGGTTGCGCAGGTAGTGGGCGTAGGTGGGGGTATCGGCGGCGAAGTCGGCGGCGTTGTCCCAGGCGCCGATGCGGGTAGGCAAGCGACCG CTGACCAGGGTGAAGCGCGACGGCGCGCAGAGCGGGCTGTTGCAGTACGCCGAGTCGAACACCACGGCCCGTTCGGCGAGGCGCGAGAGGTGAGGCATGC GCAGCACCGAGCGCGGATCGTGAAGCGGCAGCAGCGGCGCGGCCATCTGGTCGGCCATGATGAACAGGATGTTCGGCGAGGTCTTCATCGGGCGGCTTAT CCCATGCGATTGGGTTATGCGATAGTGCTGCGTCGATCATCAGTGCATCGAAATCCCTGGTAAACCGCATGGGGCTGGATGCGTTGGATAAGCCTGGCTT
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| DNA Sequence for Gene |
>AAY82_RS16925
ATGGGAGAACGCCTCATGCCGCTGTCCCTCGACCTGCTCCGGGTATTCGAGTCCGCCGCCCGCCAGCTCAGCTTCACCGCTGCCGCCGAGGAGCTGGGGA CCACTCAGCCTGCGGTCAGCCAGCAGATCAAACGCCTGGAGAAGGAGCTGGCGACCCCTCTGTTCCAGCGCGTCCATCGAGGCATCGTGCTCACCGACGC CGGCCAGCTCCTGCTCCGCCACGTGGCCGCCGGCCTCGAGACGATCGATGCCGGCATCGCCGCGCTGGGCGCGCGCCAGCGCCACGAGGTGCTCCAGGTG GCCACCGACTACGCCTTCGCCGCCTACTGGCTGATGCCGCGCCTTCCGCGCTTCCACCAGGCCCATCCGCATCTGGACGTGAGCCTGGTGACCAGCGAGC GCGGCCTGGCCGGCCAGCGCGGCGATATCGACGTGGCGATCCTGTTCGGCGACGGTCGTTCCAAGCACGGCGAAGCGCACCGGCTGTTTCGCGAGGAGGT GTTCCCGGTCTGTAGCCCGCGCCTGGTCGAGGGATTGCAGTTGCCGCTGGCCAAGGTGCACCTGGCGCGCCTGCCGATGCTGCATCTGAAGCCGGCGCAG CACGCCCGCTGGTTCGACTGGCCGGCGTTGTTCGAAGCGTTGGCCATCGATCGGCAGCCGATTCCGGCGGTGCTCAGCTTCGACAACTACACCTTGCTGA TCCAGGCGGCCATCGCCGGCCAGGGCGTGGCCATCGGCTGGCGCCACCTGGTCGACGGCCTGCTCGAACAGGGGCTGCTTTGCCGGCCCATTGGCGAGAG CTGCCTGTCGCGATACGGGTACTATGCGGTATTGCCGGAGCGCAAGCGGCGCCAGCGGCTGGTCGACGGTTTCGTCGACTGGCTGCAGGCCGAGTTGCAG GCCGGCGGCGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGAGTTGACGATGAACGAGTATTCCACCCCCCGCATCCAGGGCTTCCATGCTCACGTCTATTTCGATGCGCAGAGCATCGAGCGAGCCCGCGCCCTTTGC GAAGAGGCGGCGCGGCGCTTTCCGCTGAAGATGGGGCGGGTCCATGAGCGGCCGGTAGGGCCGCATCCGGACTGGAGCTGCCAGCTGGCATTCGCTCCCG AGGTGTTCGGCGAGCTGGTGCCCTGGCTGGCCATCCATCGGCAGGACCTGGTGGTGTTCATCCACCCGGTCACCGGCAACGATCTGCTCGACCATCGCGA CCGAGCCATCTGGATGGGAGCCATTCGCCCGCTGGACCTGTCGATCCTGGACGAAGGCCCGCAACGCTATGACTTCGCCGTGCCTTGAGGCGCGGTCATC GTCATCCAGTCGTGCAGTTCGCATTGCAGCTCGCCCAGTGCCGTCACCAGGTCGTCGACGGCATCGGCGAGCTTGCGCACGGAGCTTTCGCCGCAGGCGA
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MGERLMPLSLDLLRVFESAARQLSFTAAAEELGTTQPAVSQQIKRLEKELATPLFQRVHRGIVLTDAGQLLLRHVAAGLETIDAGIAALGARQRHEVLQV ATDYAFAAYWLMPRLPRFHQAHPHLDVSLVTSERGLAGQRGDIDVAILFGDGRSKHGEAHRLFREEVFPVCSPRLVEGLQLPLAKVHLARLPMLHLKPAQ HARWFDWPALFEALAIDRQPIPAVLSFDNYTLLIQAAIAGQGVAIGWRHLVDGLLEQGLLCRPIGESCLSRYGYYAVLPERKRRQRLVDGFVDWLQAELQ AGGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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