Pseudomonas aeruginosa UM-01, AAY82_RS12535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain UM-01, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAATCGACCCCGCTGGCGCAACTGGTGTTGCCCGGCGTCCGGGTACTGACCTACGGCGAGCGGATCGCCGTGGGCAGCGATGGACAGGACCGCTCGAAC CAGGAAAAGGACCCGCGTCCGCCGCGTACCGCGGTGCTGGCGGTACCGGAGGACGGCGTGGCGCGGCTGATGCTGGCGAGCCAGGCCGGTTCGCTGCGCC TGGCCATCCGCAGCAAGGACGAAGAACTCTACCGCAGGGAGCAGGAAGGCGCGCTGCTGCAAGCGTCGCTGGGCGCGCCGAGCGCGGCGCTGAGTCTCGA CCAACTGCTGGAGCGCCGCAAACCGACGGCGCCGAGCGTGCGCAGCGCGGCTCCGCGCGTGCCGGTGGCCAACGGGGTCACGGTCTACCGTGGCAGCGCC ATGACCCATGAAGTGCCTTGAGGGGAGCCGGCATATGCATCGGAGCACCGGGATAGGCGTGTCGCGCTGGCTGGGAGGGCTGCTGGGGGTGGCGTTGGCG
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| DNA Sequence for Gene |
>AAY82_RS12535
CTGCCGGCACTGGCTTTGCCGCAGGGCTGCATCGAGTTGCTGGCGCAGGCGCCGCGGGTCGACGTCGTCCAGGGACAACAGCGTGACCTGCGCCTGGCGG TGCCGATCGAACGGCTGGCCATCGGCGATCCGAAGATCGCCGACGTACAGTTGCTGGATCGTCGCGGCTTCCTGGTCACCGGTAAGGAACAGGGCTCCAC CAGCCTGCTGATCTGGACCGGCTGCAGTCCCGAGCCGTTGCGCAGCCTGGTGGAGGTCGAGGGACGCGGTAGCGTCGATACCCGCGGTGCTCCAGCGTTC ACCGTCGGCGCCGCAGAGGAGCTGCCGAACCAGGTGCAGACCGATATCCGCTTCGTCGAGGTCAGCCGCAGCAAGCTGAAGCAGGCCAGCACCTCGTTCG TCCGCCGCGGCGGCAACCTCTGGGTGCTCGGTGCGCCGGGCAGCCTCGGCGACATCAAGGTCAATGCCGACGGCAGCGGCCTGGGCGGCACCTTCGGCAC CGGCAGCTCGGGATTCAACCTGATCTTCGGCGGCGGCAAGTGGTTGAGCTTCATGAATGCCCTGGAGGGCAGCGGCTTCGCCTATACCCTGGCGCGCCCG AGCCTGGTGGCGATGAGCGGGCAGAGCGCGTCGTTCCTCGCCGGCGGCGAGTTTCCGATCCCGGTGCCGAACGGCACCAACGACAACGTCACCATCGAAT ACAAGGAGTTCGGCATCCGCCTGACCCTCACCCCGACGGTGATGAACAACCGCCGCATCGCTCTCAAGGTGGCGCCGGAGGTCAGCGAACTGGACTACAG CGCCGGCATCCAGAGCGGCGGGGTGGCGGTGCCGGCACTGCGCGTCCGGCGCACCGACACCAGCGTGATGCTGGCCGACGGCGAGAGCTTCGTGATCAGC GGGCTGACCAGCAGCAACTCGGTGAGCAACGTCGACAAGTTTCCCTGGCTGGGCGACATCCCGATCCTCGGTGCGTTCTTCCGCTCGACCAAGCTGGACA AGGACGACCGCGAGCTGCTGATGATCGTCACCCCGCACCTGGTCCAGCCGCTGGCCGCCGACGCACAGTTGCCGGACCTGCCCGGCGAGGGCCTGCGGCA CTACGATCCGGGGTTCTCGCGCCTGTACTTCCTCGAGCGCGGCGAGTACGACGGCCAGCAGAACGACACCGGTCTGTCGGATTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGGCGCGCATGAACCAGAACTTCGTGGCGCTGACCCAGCATCCCGGCGAACTCGACTGGTTGCAGAACAGCCTGGCGTCCGCCGGCCAGGTGGTTCCGG CAGGCAGCGCCAGCCTGGAGGAGCTGCTGGCGCTGCTCGACGTCACCGCCGCCGGGGTGCTGTTCATCAGCCTCGGCAAAAGCAACCTGGTGTCCCAGGG CGCGCTGGTCGAGGGATTGGTATCGGCGCGGCCGATGCTCTCGGTGGTGGCCATCGGCGACGGCCTGGACAACCAGTTGGTGCTAGCGGCGATGCGCGCC GGCGCGCGCGACTTCATCACCTACGGCGCCCGCGCCAGCGAGCTGACCGGGCTGATCCGGCGCCTCGGCGGACGCCTGCCCAGCGTGCCGGTGAGCGCGG CGCGCCAGGGCGAGCTGCTGACCCTGGTCAGCGCCCGACCGGACGCCGACGGCGCCTTCGTCGCCTTGCACCTGGCCAAGGCGTTGCAGGAGCAGACGCC
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| Amino Acid Sequence |
>secretin
MPALALPQGCIELLAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWTGCSPEPLRSLVEVEGRGSVDTRGAPAF TVGAAEELPNQVQTDIRFVEVSRSKLKQASTSFVRRGGNLWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLARP SLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVIS GLTSSNSVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLERGEYDGQQNDTGLSD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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