Pseudomonas aeruginosa MRSN 321, T649_RS25625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa MRSN 321 contig12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGTGCGACGCGGCCTACGACAAGCTGGTCAAGGCTGCCAAGCGGGTCTCCGACCAGGACAAGCGCAGCGAGCTGTACAAGCAGGCCCAGCACATCCTCA AGGAGCAGGTGCCGATCACCCCGATCGCCCACTCCACCGTGTACCAGCCGATGAACAAGTCGGTGCATGACTTCAAGATCAGCCCCTTCTCGCGGAACGC CTTCTATGGCGTAGCCAACCAGCCCTGATGCCGACGCCACCCCGGTCGTGAAACGACCGGAGTGCAGAAGAACGGCACGACCCGTACTTCATTTCTTTGC TTTTCCTGCCCGTGTTCCAGAACGGCGCTGCGCGCGTTCCGCCAGGAGCGCTCGCCTCGCCGTATTCGACCGCCGCGCCCAGGCGCGGGCGAAACCGGCG CAAACCTGGTGGGTAAAACAGGTGCCATGACAACAATAAAGGGAGCAATCAGGTGATGAGATACCAACGAGTGACCGGCGCGACGCTGGGATTGGCCTTG
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| DNA Sequence for Gene |
>T649_RS25625
ATGGCATCGGCCGCGCCAGGCTGGGCAGCGGACGAGCAGGCAACCCCGCCGACCCCGGACAATCCCAGCTACGCCGCCCAGGTGCAGAGCATCCCCAGCG TGGAGAAACCGATCAAGGGCCAGGCCGGCGCCAGCGGGCTGTTCGAGGGGCAGAGCCTGACCCTGACCACCCGCAACTTCTACTCGCGGGAAAACATGAA GGACAGCTTCACCTTCCGCATTCCCAAGGCCGGCGGCGGCTCCCAGCGCATCCACCAGCGCAACGCCTGGGTCCAGGGCACGGTGCTCAAGTACAGCTCG GGCTACACCCAGGGCAGCATCGGCTTCGGCTTCGACGTCGCAGCCTTCAACGAGATCGCCCTGGAGCGCGGCAAGGGCCGCATCGGCGGCGGCGGCAACC GGACCCTGGCAAACAGCGATGGCGAGGCGATCGGCGAGTGGTCCAAGCTGGGCGTCGCCAACATCCGCCTGCGCGCCTCGAATACCGAATTCAAGGCCGG TCGCTTCCTGGTCAACACTCCAGTGTTCAGCTATATCGACAACCGTGCCCTGCCCTCCAGCTTCACCGGCTTCGCCGTGACCAGCGAGGAGCTGGACAAC CTCAGCCTGCAGGCCGGCAGCTTCCGCAAGGTCAGCCCGCGGACCGGTTCCGGCGACGAGGACATGACCACCGAGTACGGCACCCGCCAGGTCAAGGGCG ACCGCCTGAACTACCTGGGCGGCAACTACAAGCCGCTCGACGGGCTGGAAATCTCCCTCTATGGCTCGCATTTCCAGGACGTCTGGAACCAGTACTACCT GGGCGTGACCCACGACATCGGCGACCTCGAGAACGGCATCGCCCTGCGCACCGCCTTCAACGGCTACCACACCGGCGACACCGGCGCGCGCGAGGCCGGC TACATCGACAACGACACCTGGAGCCTGGCCTTCACTCTCGGCCATCGCGCCCACGCCCTGACCCTGGCCTACCAGCAGGTCGACGGCAACGAATACTTCG ACTACGTGCACGAGACCTCGGCGATCTTCCTGGCCAACTCGATGCTGGCCGACTACAACAGCCCCAACGAGAAGTCCGCGCAGATCCGCTACGAGACCGA CTGGAGCTACTACGGGGTCCCCGGCCTGAGCACCGGCGTGTGGTACGTGAAGGGCTGGGACATCGACGGCACCCACTACGACGGCGATCGCAACGGTGCC TACGGCAACTACGCCGAGGTGCGCGCCCAGGACGGCGAGAAGCACCACGAGCTGGGCCTGATGGCGGCCTACAAGGTGCAGAACGGGCCGATCAAGGACA GCACCTTCAAGCTCACCTACATGATGCACAAGGCCAGCCAGAACCAGGTCGACGGCAGCGTCAACGAACTGCGCCTGGTCAGCACCTTCCCCTTCAACCT GCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCTGCGACAACCGGCGGCCCCGGCGACGGGGCCCACGAGGAGGACCCCATGCTCCATCCGTTGCTCCGACACCTGCCCCTGGCCCTGGCGCTATGCGCC GCCGGCGCGGCCCAGGCGAAGAACCTGGTGGTCTGCACCGAGGCCAGCCCGGAAGGCTTCGACATCGTCCAGTACACCGGCGCGGTGACCGCCGACGCCT CCGCGGAAACCGTGTTCAACCGCCTGCTCGCCTTCCGCCCCGGCACCACCGAGGTGATCCCGGGGCTGGCCGAGCGCTGGGACGTCAGCGCCGACGGACT GAGCTATACCTTCCACCTGCGCCCCGGCGTGAAATTCCATACCACCGACTACTTCAAGCCGACCCGGAGCCTGAATGCCGATGATGTGCTGTGGACCTTC CAGCGCGCCCTCGATCCGAAGCATCCCTGGCATGCCTCGGCGCTGCGCGGCTACGCCTACTTCGACGCGATGGGCATGGGCGAGCTGATCAAGTCGGTGG
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| Amino Acid Sequence |
>porin
MASAAPGWAADEQATPPTPDNPSYAAQVQSIPSVEKPIKGQAGASGLFEGQSLTLTTRNFYSRENMKDSFTFRIPKAGGGSQRIHQRNAWVQGTVLKYSS GYTQGSIGFGFDVAAFNEIALERGKGRIGGGGNRTLANSDGEAIGEWSKLGVANIRLRASNTEFKAGRFLVNTPVFSYIDNRALPSSFTGFAVTSEELDN LSLQAGSFRKVSPRTGSGDEDMTTEYGTRQVKGDRLNYLGGNYKPLDGLEISLYGSHFQDVWNQYYLGVTHDIGDLENGIALRTAFNGYHTGDTGAREAG YIDNDTWSLAFTLGHRAHALTLAYQQVDGNEYFDYVHETSAIFLANSMLADYNSPNEKSAQIRYETDWSYYGVPGLSTGVWYVKGWDIDGTHYDGDRNGA YGNYAEVRAQDGEKHHELGLMAAYKVQNGPIKDSTFKLTYMMHKASQNQVDGSVNELRLVSTFPFNLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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