Pseudomonas aeruginosa Carb01 63, YQ19_RS28350
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa strain Carb01 63, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ACCACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCTATCGTCGGCGCCATCCTCTACAAATCCGCCGTGGC ACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCGACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGG GACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATGCAGCTGAACTTCTCCATGCGCACCACCCACATCTTCCCCAGCATGGCCATCCAGATGA CCGCCATCGGCGAGGAGTCGGGCGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGC CCTGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAGCTGGGCAACGTCGTCTAA
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| DNA Sequence for Gene |
>YQ19_RS28350
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAGCTTCCTCAACGTCGTCGTGC ATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGCTGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCT GCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGCCCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAACTGCTCGTCCTGC AAGGCCGCCATCGGCAAACGCTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTGCTGCCGCTGCTCTGGCTGGG CCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGTGTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTC AAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACTTCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCC TGCTGTCGTCGCTGGTCGGGGCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCAACCCTGGATACTAGGCCTCACGGGCGGTATCGGCAGCGGCAAGAGCGCAGCCGCCGAGCATTTCATTTCCCTCGGCGTCCACCTGGTGGACGCCGA CCATGCCGCCCGCTGGGTGGTGGAGCCGGGGCGTCCGGCCCTGGCGAAGATCGTCGAACGCTTCGGCGACGGCATTCTCCTGCCCGATGGCCAGCTCGAC CGAGCCGCCTTGCGCGAGCGGATCTTCCAGGCGCCGGAGGAACGGCGCTGGCTGGAGCAATTGCTACACCCGCTGATCGGCGCGGAGATCGTCCAGTACC TGGCCAGGGCCGAATCACCCTACGCTATCCTGGTCTCGCCGCTACTGGTGGAGTCCGGCCAGCGCCAGATGACCCAGCGCGTGCTGGTGGTGGATACCCC GGAACATCTGCAACTACAGCGCACCATGCTTCGCGACAAGGTCTCCGAGGAGCAGGTGCGCTCGATCCTCCAGGCCCAGGCCCGGCGCGACGAGCGCTTG
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| Amino Acid Sequence |
>type 4 prepilin peptidase PilD
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIRPWENIPLVSYLALGGNCSSC KAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLVLPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLF KLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGAILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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